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zktuong / dandelion

dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
https://sc-dandelion.readthedocs.io/
GNU Affero General Public License v3.0
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fastq #213

Closed saramoein372 closed 1 year ago

saramoein372 commented 1 year ago

Description of the issue

Hi Kelvin,

I was wondering if you can share your BCR fastq file for one of the healthy control samples in your covid paper?

Thank you, Sara

zktuong commented 1 year ago

Hi Sara,

unfortunately i would not be able to simply provide the fastqs of the samples as they require data access control agreements between your institution and Cambridge NIHR Bioresource and University of Newcastle. The page which has this info is here: https://ega-archive.org/studies/EGAS00001005465. I believe the Sanger data doesn't have healthy samples so you wouldn't need that.

Please consult your group leader and also your research contracts office about the procedures you would need to adhere to as it will involve the legal teams on both sides (your side and Cambridge/Newcastle side) to have an agreement before any data sharing can be enabled from the European Genome-Phenome Archive.