sfdp layout doesn't scale well with large datasets

zktuong / dandelion

dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data

https://sc-dandelion.readthedocs.io/

GNU Affero General Public License v3.0

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Open zktuong opened 2 years ago

zktuong commented 2 years ago

it then just gives up and plots it as a square....

zktuong commented 2 years ago

or maybe the issue is it does not scale well with a lot of edges? either way, not good.

zktuong commented 2 years ago

it looks like:

expanded only just fails terribly: