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zktuong / ktplots

Some tools for plotting single-cell data
https://zktuong.github.io/ktplots/
MIT License
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problem in plot_cpdb #88

Closed GGboy-Zzz closed 4 months ago

GGboy-Zzz commented 8 months ago

Hi, I met a problem with the function "plot_cpdb", Its parameter "cell_type1" or "cell_type2" accepts regex pattern. Can I avoid this regex pattern to specify a unique cell_type?

zktuong commented 8 months ago

you can be specific with your regex e.g. ^Tcell$- this would then force it to look for only Tcell. as long as you name your celltypes uniquely. if not, i would suggest for you to insert a unique pattern into your celltype annotations and rerun cellphonedb.

stale[bot] commented 4 months ago

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