Closed lihaowhusos closed 11 months ago
hi @lihaowhusos, my apologies. i didn't update the tutorial. the new way to call plot_cpdb_heatmap
does not require adata
nor celltype_key
so your command can simply be:
kpy.plot_cpdb_heatmap(
pvals = pvals,
figsize = (5,5),
title = "Number of significant interactions",
symmetrical = False,
)
@zktuong Thank you very much for your response. I tried the code as you suggested and I was able to successfully get the images.
Hi, thank you for developing such a great package. I meet some problems in plotting my data with ktplotspy. The "adata" file is the one analyzed by cellphnedb. However, it donot work with ktplotspy. I run the plot like this:
It created this error: