Seems like the previous issue related to src/ssimp.cc:1771 has been fixed. However, a new issue raised as below. More info can be found in the attached log file.
chrm1 11,000,000-12,000,000
5,497 # GWAS SNPs in this window (with 250,000 flanking)
4,193 # SNPs in both (i.e. useful as tags)
9,134 # target SNPs (anything in narrow window, will include some tags)
ssimp: src/ssimp.cc:1777: mvn::SquareMatrix ssimp::make_C_tag_tag_matrix(const std::vector<const std::vector*>&): Assertion `c_kl == 1.0' failed.
ssimp.log Dear Zoltan,
Seems like the previous issue related to src/ssimp.cc:1771 has been fixed. However, a new issue raised as below. More info can be found in the attached log file. chrm1 11,000,000-12,000,000 5,497 # GWAS SNPs in this window (with 250,000 flanking) 4,193 # SNPs in both (i.e. useful as tags) 9,134 # target SNPs (anything in narrow window, will include some tags) ssimp: src/ssimp.cc:1777: mvn::SquareMatrix ssimp::make_C_tag_tag_matrix(const std::vector<const std::vector*>&): Assertion `c_kl == 1.0' failed.
Is this caused by monomorphic or missing values?
Many thanks, patrick