1) The 'time' issue was due to the fact that I arranged for each test to record its runtime. This would be interesting to know, but we don't want it to be a problem for other users. I use the '-o' option to time, which is standard on Linux, but not available on OSX apparently, so now I just stop trying to record the time.
2) I submitted a small subset of the gwas file, just a the tags that were needed
3) fix the 'readlink' problem by (ab)using 'pwd'. Hope it works on OSX
2 (actually, now 3) things:
1) The 'time' issue was due to the fact that I arranged for each test to record its runtime. This would be interesting to know, but we don't want it to be a problem for other users. I use the '-o' option to time, which is standard on Linux, but not available on OSX apparently, so now I just stop trying to record the time.
2) I submitted a small subset of the gwas file, just a the tags that were needed
3) fix the 'readlink' problem by (ab)using 'pwd'. Hope it works on OSX