1) offer to download 1KG if the user requests it via the --ref ~/reference_panels/1000genomes/ALL.chr?????.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz command line argument. This should fix some of the assertion errors we get with assert(which_build_ref == which_build_gwas);. Previously, the offer to download only occured if 1KG/EUR was requested
2) Put the version number and date at the very start of the usage message. This will help us later to confirm with users which version they are using
3) Update the version file accordingly. Also, I reversed the order
4) Add a new Linux binary with all the above: compiled/ssimp-linux-0.5.1
A few things (but only one substantial thing!):
1) offer to download 1KG if the user requests it via the
--ref ~/reference_panels/1000genomes/ALL.chr?????.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gzcommand line argument. This should fix some of the assertion errors we get withassert(which_build_ref == which_build_gwas);. Previously, the offer to download only occured if1KG/EURwas requested2) Put the version number and date at the very start of the usage message. This will help us later to confirm with users which version they are using
3) Update the version file accordingly. Also, I reversed the order
4) Add a new Linux binary with all the above:
compiled/ssimp-linux-0.5.1TODO: we should add a new Mac binary too