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zkutalik / ssimp_software

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"Error: Necessary file missing or corrupt" on test example #90

Closed Jeremy37 closed 6 years ago

Jeremy37 commented 6 years ago

When I try to run the minimal example, I get the following error:

jeremys/software/ssimp_software-master$ ./ssimp --gwas gwas/small.random.txt --ref ref/small.vcf.sample.vcf.gz --out output.txt file_name:gwas/small.random.txt ... loading the 1.7GB database of positions under three builds. This will take about a minute. Exiting: src/ssimp.cc:177 Error: Necessary file missing or corrupt [/nfs/users/nfs_j/js29/reference_panels/database.of.builds.1kg.uk10k.hrc.2018.01.18.bin]. Please download it with the following commands:

cd       ~/reference_panels
wget -c -nd    'https://drive.switch.ch/index.php/s/uOyjAtdvYjxxwZd/download' -O database.of.builds.1kg.uk10k.hrc.2018.01.18.bin

Shouldn't the minimal example work without any additional downloads?

Jeremy37 commented 6 years ago

Okay, I didn't read the docs well enough, where is states that you just have to download this file before first running ssimp.