# in a Python 3.7 environment (or newer)
# also nice if nodejs is available (this is not required for MAW as of 2022-12-16)
pip install toil[cwl]
export TOIL_SLURM_ARGS="--partition=thin" # set queue name and any other required arguments for sbatch (but not memory or cores
toil-cwl-runner --singularity --batchSystem slurm --disableCaching true --outdir results_1 maw.cwl maw_job.yaml
(alas, toil-cwl-runner does not support --provenance yet)
ResourceRequirements
] (https://www.commonwl.org/v1.0/CommandLineTool.html#ResourceRequirement) withramMin
andcoresMin
for all theCommandLineTools
(alas,
toil-cwl-runner
does not support--provenance
yet)