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zoecastillo / microbiomeExplorer

The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.
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Report generation #7

Open udaydd opened 3 years ago

udaydd commented 3 years ago

I am not able to generate the report in html and also unable to find what is going wrong? Could you please help me to solve this issue?

zoecastillo commented 3 years ago

Sure. I would be happy to help if I can.

Do you see any specific error messages in the R console?

Could you do a sessionInfo() copy the results here?

Other users have had issues if external tools like pandoc or phantomjs was not installed. This thread might help with such issues: Problems with reports