zoglauer / megalib

MEGAlib - the Medium-Energy Gamma-ray Astronomy library
http://megalibtoolkit.com
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ROOT compile error, libxml and unicode/ucnv_err.h #51

Closed GammaMichael closed 5 years ago

GammaMichael commented 5 years ago

I have Mac OS 10.13.6

I use MacPorts so I renamed .profile and opened a new terminal window.

echo $PATH shows /Applications/CMake.app/Contents/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin

I tried both the latest release and experimental branches with the same results.

The root installation fails with:

[ 78%] Built target ROOTVecOps make: *** [all] Error 2 ERROR: Something went wrong while compiling ROOT!

ERROR: Something went wrong during the ROOT setup.


problems and possible problems in experimental were:

[ 75%] Building CXX object core/base/CMakeFiles/Base.dir/src/TVirtualViewer3D.cxx.o [ 75%] Building CXX object core/base/CMakeFiles/Base.dir/src/TVirtualX.cxx.o [ 75%] Built target Base Scanning dependencies of target gitcommit [ 75%] Recording the git revision now [ 75%] Built target gitcommit Scanning dependencies of target BaseTROOT [ 75%] Building CXX object core/CMakeFiles/BaseTROOT.dir/base/src/TROOT.cxx.o [ 75%] Built target BaseTROOT [ 75%] Generating dummy.cxx Scanning dependencies of target Core [ 75%] Building CXX object core/CMakeFiles/Core.dir/dummy.cxx.o [ 75%] Linking CXX shared library ../lib/libCore.so ld: warning: text-based stub file /System/Library/Frameworks//Cocoa.framework/Cocoa.tbd and library file /System/Library/Frameworks//Cocoa.framework/Cocoa are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/PrivateFrameworks/CoreSymbolication.framework/CoreSymbolication.tbd and library file /System/Library/PrivateFrameworks/CoreSymbolication.framework/CoreSymbolication are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//AppKit.framework/Versions/C/AppKit.tbd and library file /System/Library/Frameworks//AppKit.framework/Versions/C/AppKit are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation.tbd and library file /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices.tbd and library file /System/Library/Frameworks//ApplicationServices.framework/Versions/A/ApplicationServices are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation.tbd and library file /System/Library/Frameworks//Foundation.framework/Versions/C/Foundation are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/Versions/A/CoreFoundation are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics.tbd and library file /System/Library/Frameworks//CoreGraphics.framework/Versions/A/CoreGraphics are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText.tbd and library file /System/Library/Frameworks//CoreText.framework/Versions/A/CoreText are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO.tbd and library file /System/Library/Frameworks//ImageIO.framework/Versions/A/ImageIO are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices.tbd and library file /System/Library/Frameworks//CoreServices.framework/Versions/A/CoreServices are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis.tbd and library file /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork.tbd and library file /System/Library/Frameworks//CFNetwork.framework/Versions/A/CFNetwork are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices are out of sync. Falling back to library file for linking. ld: warning: text-based stub file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList.tbd and library file /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList are out of sync. Falling back to library file for linking. [ 75%] Built target Core Scanning dependencies of target GdequeDict Scanning dependencies of target Gunordered_multimapDict Scanning dependencies of target GcomplexDict Scanning dependencies of target Gunordered_multisetDict Scanning dependencies of target G__unordered_setDict Scanning dependencies of target G__setDict

and

[ 78%] Building CXX object io/xml/CMakeFiles/XMLIO.dir/src/TBufferXML.cxx.o [ 78%] Built target G__Smatrix [ 78%] Building CXX object io/xmlparser/CMakeFiles/XMLParser.dir/src/TDOMParser.cxx.o [ 78%] Building C object net/http/CMakeFiles/RHTTP.dir/civetweb/civetweb.c.o In file included from /Users/briggsm/Desktop/DesktopDocuments/Megalib/MEGAlib/external/root_v6.14.08/root_v6.14.08-source/io/xmlparser/src/TDOMParser.cxx:28: In file included from /opt/local/include/libxml2/libxml/tree.h:1307: In file included from /opt/local/include/libxml2/libxml/xmlmemory.h:218: In file included from /opt/local/include/libxml2/libxml/threads.h:35: In file included from /opt/local/include/libxml2/libxml/globals.h:18: In file included from /opt/local/include/libxml2/libxml/parser.h:810: In file included from /opt/local/include/libxml2/libxml/encoding.h:31: /opt/local/include/unicode/ucnv.h:52:10: fatal error: 'unicode/ucnv_err.h' file not found

include "unicode/ucnv_err.h"

     ^~~~~~~~~~~~~~~~~~~~

1 error generated. make[2]: [io/xmlparser/CMakeFiles/XMLParser.dir/src/TDOMParser.cxx.o] Error 1 make[1]: [io/xmlparser/CMakeFiles/XMLParser.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 78%] Building CXX object math/vecops/CMakeFiles/ROOTVecOps.dir/src/RVec.cxx.o Scanning dependencies of target Net [ 78%] Building CXX object io/xml/CMakeFiles/XMLIO.dir/src/TKeyXML.cxx.o


Why did the make process use files from /opt/local instead of using the libxml2 at /usr ?

zoglauer commented 5 years ago

I do not know why ROOT decides to use the macports version.

I want to try to reproduce your environment. Could you do a port -qv installed > myports.txt and email me the output. Then I can install the same ports on my test machine and check if I can reproduce the issue.

Best, Andreas

GammaMichael commented 5 years ago

Hello Andreas,

Thanks for your quick reply and effort to investigate this problem The requested file is attached.

Best, Michael

On 4/21/19 12:59 AM, zoglauer wrote:

I do not know why ROOT decides to use the macports version.

I want to try to reproduce your environment. Could you do a |port -qv installed > myports.txt| and /email/ me the output. Then I can install the same ports on my test machine and check if I can reproduce the issue.

Best, Andreas

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/zoglauer/megalib/issues/51#issuecomment-485227213, or mute the thread https://github.com/notifications/unsubscribe-auth/ACUHGFCTFXBZLJ5Z3FEDIHTPRP7E5ANCNFSM4HHKHBZQ.

--

Michael S. Briggs University of Alabama in Huntsville Michael.Briggs@uah.edu 256-961-7667 Principal Research Scientist Deputy PI, Fermi Gamma-ray Burst Monitor (GBM) Assistant Director, The Center for Space Plasma and Aeronomic Research (CSPAR)

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platform='darwin 17' archs='x86_64' date='2018-10-26T22:27:46-0500' cmake @3.12.0_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:25-0500' cmake @3.12.3_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:27:58-0500' cmake @3.12.4_0 platform='darwin 17' archs='x86_64' date='2018-11-21T19:04:48-0600' cmake @3.13.2_0 platform='darwin 17' archs='x86_64' date='2019-01-06T10:47:15-0600' cmake @3.13.3_0 platform='darwin 17' archs='x86_64' date='2019-01-23T03:28:44-0600' cmake @3.13.4_0 platform='darwin 17' archs='x86_64' date='2019-02-07T02:42:56-0600' cmake @3.14.0_0 platform='darwin 17' archs='x86_64' date='2019-03-22T05:10:33-0500' cmake @3.14.1_0 (active) platform='darwin 17' archs='x86_64' date='2019-04-02T00:36:05-0500' colordiff @1.0.18_0 (active) platform='darwin 17' archs='noarch' date='2019-02-22T00:35:25-0600' curl @7.61.0_0+ssl platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:46-0500' curl @7.61.1_0+ssl platform='darwin 17' archs='x86_64' 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archs='noarch' date='2019-04-02T00:35:26-0500' cyrus-sasl2 @2.1.26_6+kerberos platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:20-0500' cyrus-sasl2 @2.1.27_1+kerberos (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:47:24-0600' db48 @4.8.30_4 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:15-0500' dbus @1.12.8_2 platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:29-0500' dbus @1.12.10_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:28:04-0500' dbus @1.12.12_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:47:28-0600' dos2unix @7.4.0_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:29:39-0500' enscript @1.6.6_0+mediaLetter (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:26:54-0500' expat @2.2.5_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:15:05-0500' expat @2.2.6_1 (active) platform='darwin 17' archs='x86_64' date='2018-10-26T22:27:55-0500' gcc5 @5.5.0_1 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platform='darwin 17' archs='x86_64' date='2018-10-26T22:30:47-0500' git @2.20.1_0+credential_osxkeychain+diff_highlight+doc+pcre+perl5_26 platform='darwin 17' archs='x86_64' date='2019-01-06T10:54:04-0600' git @2.20.1_1+credential_osxkeychain+diff_highlight+doc+pcre+perl5_26 platform='darwin 17' archs='x86_64' date='2019-01-23T03:29:39-0600' git @2.20.1_2+credential_osxkeychain+diff_highlight+doc+pcre+perl5_26 platform='darwin 17' archs='x86_64' date='2019-02-16T11:24:02-0600' git @2.21.0_2+credential_osxkeychain+diff_highlight+doc+pcre+perl5_26 (active) platform='darwin 17' archs='x86_64' date='2019-03-22T05:16:35-0500' glib2 @2.56.1_0+x11 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:42-0500' glib2 @2.58.1_0+x11 platform='darwin 17' archs='x86_64' date='2018-10-26T22:27:48-0500' glib2 @2.58.2_0+x11 platform='darwin 17' archs='x86_64' date='2019-01-06T10:46:13-0600' glib2 @2.58.3_0+x11 (active) platform='darwin 17' archs='x86_64' date='2019-02-07T02:41:53-0600' gmp 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@3.6.5_1+doc platform='darwin 17' archs='x86_64' date='2019-01-23T03:30:00-0600' gnutls @3.6.6_0+doc platform='darwin 17' archs='x86_64' date='2019-02-07T02:43:26-0600' gnutls @3.6.6_1+doc platform='darwin 17' archs='x86_64' date='2019-02-16T11:24:23-0600' gnutls @3.6.7_0+doc platform='darwin 17' archs='x86_64' date='2019-04-02T00:36:19-0500' gnutls @3.6.7.1_0+doc (active) platform='darwin 17' archs='x86_64' date='2019-04-11T23:51:31-0500' gsl @2.4_2 platform='darwin 17' archs='x86_64' date='2018-08-08T17:14:33-0500' gsl @2.5_1 (active) platform='darwin 17' archs='x86_64' date='2018-10-26T22:32:10-0500' icu @58.2_2 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:25-0500' inetutils @1.9.4_10+client platform='darwin 17' archs='x86_64' date='2018-10-27T12:17:26-0500' inetutils @1.9.4_11+client (active) platform='darwin 17' archs='x86_64' date='2019-02-07T02:44:23-0600' isl @0.18_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:43-0500' isl @0.20_0 (active) platform='darwin 17' archs='x86_64' date='2018-10-26T22:28:49-0500' isl18 @0.18_0 (active) platform='darwin 17' archs='x86_64' date='2018-10-26T22:28:05-0500' jpeg @9c_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:30-0500' KeePassX @2.0.3_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:29:04-0500' kerberos5 @1.16.1_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:54-0500' kerberos5 @1.16.2_0 platform='darwin 17' archs='x86_64' date='2018-11-21T19:06:44-0600' kerberos5 @1.17_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-23T03:29:08-0600' lcms2 @2.9_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:31-0500' lcms2 @2.9_1 (active) platform='darwin 17' archs='x86_64' date='2018-10-26T22:32:11-0500' ld64 @3_1+ld64_xcode (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:44-0500' ld64-xcode @2_1 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:43-0500' libarchive @3.3.2_1 platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:22-0500' libarchive @3.3.3_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:27:56-0500' libarchive @3.3.3_1 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:46:47-0600' libassuan @2.5.1_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:16-0500' libassuan @2.5.3_0 (active) platform='darwin 17' archs='x86_64' date='2019-03-22T05:16:44-0500' libcomerr @1.44.3_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:53-0500' libcomerr @1.44.4_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:30:10-0500' libcomerr @1.44.5_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:47:19-0600' libcxx @5.0.1_2+universal platform='darwin 17' archs='i386 x86_64' date='2018-08-08T17:27:22-0500' libcxx @5.0.1_3 platform='darwin 17' archs='noarch' date='2019-01-06T10:45:59-0600' libcxx @5.0.1_4 (active) platform='darwin 17' archs='noarch' date='2019-01-23T03:28:09-0600' libedit @20170329-3.1_2 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:40-0500' libedit @20180525-3.1_1 platform='darwin 17' archs='x86_64' date='2018-11-21T19:04:43-0600' libedit @20181209-3.1_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:46:00-0600' libffi @3.2.1_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:40-0500' libgcc @1.0_0 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:10:47-0500' libgcc6 @6.4.0_3 platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:47-0500' libgcc6 @6.4.0_5 platform='darwin 17' archs='x86_64' date='2018-10-26T22:28:09-0500' libgcc6 @6.5.0_1 (active) platform='darwin 17' archs='x86_64' date='2018-11-21T19:05:00-0600' libgcc7 @7.3.0_1 platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:47-0500' libgcc7 @7.3.0_3 platform='darwin 17' archs='x86_64' date='2018-10-26T22:28:09-0500' libgcc7 @7.3.0_4 platform='darwin 17' archs='x86_64' date='2018-11-21T19:04:58-0600' libgcc7 @7.4.0_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:47:32-0600' libgcc8 @8.2.0_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:46-0500' libgcc8 @8.2.0_1 platform='darwin 17' archs='x86_64' date='2018-10-26T22:28:06-0500' libgcc8 @8.2.0_2 platform='darwin 17' archs='x86_64' date='2018-11-21T19:04:55-0600' libgcc8 @8.3.0_0 (active) platform='darwin 17' archs='x86_64' date='2019-03-22T05:10:45-0500' libgcrypt @1.8.3_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:17-0500' libgcrypt @1.8.4_0 (active) platform='darwin 17' archs='x86_64' date='2018-10-26T22:31:23-0500' libgpg-error @1.32_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:14-0500' libgpg-error @1.33_0 platform='darwin 17' archs='x86_64' date='2019-01-06T10:54:13-0600' libgpg-error @1.34_0 platform='darwin 17' archs='x86_64' date='2019-01-23T03:29:48-0600' libgpg-error @1.35_0 platform='darwin 17' archs='x86_64' date='2019-02-07T02:43:07-0600' libgpg-error @1.36_0 (active) platform='darwin 17' archs='x86_64' date='2019-03-22T05:16:43-0500' libiconv @1.15_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:44-0500' libidn @1.35_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:57-0500' libidn2 @2.0.5_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:40-0500' libidn2 @2.1.0_0 platform='darwin 17' archs='x86_64' date='2019-01-23T03:28:10-0600' libidn2 @2.1.1_0 (active) platform='darwin 17' archs='x86_64' date='2019-02-16T11:23:19-0600' libksba @1.3.5_1 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:18-0500' libmng @2.0.3_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:31-0500' libmpc @1.1.0_1 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:45-0500' libpng @1.6.34_1 platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:32-0500' libpng @1.6.35_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:32:12-0500' libpng @1.6.36_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:54:14-0600' libpsl @0.20.2-20180522_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:44-0500' libpsl @0.20.2-20180522_1 platform='darwin 17' archs='x86_64' date='2019-01-23T03:28:11-0600' libpsl @0.20.2-20190205_0 (active) platform='darwin 17' archs='x86_64' date='2019-02-16T11:23:20-0600' libtasn1 @4.13_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:10-0500' libunistring @0.9.10_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:39-0500' libusb @1.0.22_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:18-0500' libusb-compat @0.1.5_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:18-0500' libuv @1.22.0_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:23-0500' libuv @1.23.2_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:27:57-0500' libuv @1.24.0_0 platform='darwin 17' archs='x86_64' date='2018-11-21T19:04:46-0600' libuv @1.24.1_0 platform='darwin 17' archs='x86_64' date='2019-01-06T10:46:49-0600' libuv @1.25.0_0 platform='darwin 17' archs='x86_64' date='2019-01-23T03:28:18-0600' libuv @1.26.0_0 platform='darwin 17' archs='x86_64' date='2019-02-16T11:24:27-0600' libuv @1.27.0_0 (active) platform='darwin 17' archs='x86_64' date='2019-03-22T05:10:05-0500' libxml2 @2.9.7_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:12-0500' libxml2 @2.9.7_1 platform='darwin 17' archs='x86_64' date='2019-01-06T10:46:41-0600' libxml2 @2.9.7_2 platform='darwin 17' archs='x86_64' date='2019-02-07T02:42:06-0600' libxml2 @2.9.9_0 platform='darwin 17' archs='x86_64' date='2019-02-16T11:24:13-0600' libxml2 @2.9.9_1 (active) platform='darwin 17' archs='x86_64' date='2019-04-02T00:35:37-0500' libxslt @1.1.32_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:12-0500' libxslt @1.1.33_0 platform='darwin 17' archs='x86_64' date='2019-01-06T10:54:16-0600' libxslt @1.1.33_1 (active) platform='darwin 17' archs='x86_64' date='2019-02-16T11:24:14-0600' lz4 @1.8.2_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:21-0500' lz4 @1.8.3_0 (active) platform='darwin 17' archs='x86_64' date='2018-10-26T22:27:56-0500' lzo2 @2.10_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:22-0500' m4 @1.4.18_2 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:10-0500' mmv @1.01b-14_0 platform='darwin 17' archs='x86_64' date='2018-12-04T00:29:16-0600' mmv @1.01b-15_0 (active) platform='darwin 17' archs='x86_64' date='2019-03-22T05:17:53-0500' mpfr @4.0.1_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:45-0500' mpfr @4.0.2_0 (active) platform='darwin 17' archs='x86_64' date='2019-02-07T02:44:27-0600' ncurses @6.1_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:15:06-0500' nettle @3.4_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:11-0500' nettle @3.4.1_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:54:19-0600' npth @1.6_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:18-0500' numdiff @5.9.0_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:30:11-0500' openldap @2.4.46_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:31-0500' openldap @2.4.47_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:54:26-0600' openssl @1.0.2o_1 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:44-0500' openssl @1.0.2p_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:27:51-0500' openssl @1.0.2q_0 platform='darwin 17' archs='x86_64' date='2019-01-06T10:46:27-0600' openssl @1.0.2r_0 (active) platform='darwin 17' archs='x86_64' date='2019-03-22T05:10:01-0500' p5.26-authen-sasl @2.160.0_0 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:17:55-0500' p5.26-cgi @4.380.0_0 platform='darwin 17' archs='noarch' date='2018-08-08T17:17:56-0500' p5.26-cgi @4.400.0_0 platform='darwin 17' archs='noarch' date='2018-10-26T22:30:12-0500' p5.26-cgi @4.420.0_0 (active) platform='darwin 17' archs='noarch' date='2019-04-02T00:37:19-0500' p5.26-digest-hmac @1.30.0_0 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:17:53-0500' p5.26-digest-sha1 @2.130.0_4 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:53-0500' p5.26-error @0.170.260_0 platform='darwin 17' archs='noarch' date='2018-08-08T17:17:57-0500' p5.26-error @0.170.270_0 (active) platform='darwin 17' archs='noarch' date='2018-11-21T19:07:39-0600' p5.26-gssapi @0.280.0_3 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:55-0500' p5.26-html-parser @3.720.0_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:56-0500' p5.26-html-tagset @3.200.0_4 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:17:56-0500' p5.26-io-socket-ssl @2.58.0_0 platform='darwin 17' archs='noarch' date='2018-08-08T17:18:09-0500' p5.26-io-socket-ssl @2.60.0_0 platform='darwin 17' archs='noarch' date='2018-10-26T22:30:11-0500' p5.26-io-socket-ssl @2.66.0_0 (active) platform='darwin 17' archs='noarch' date='2019-03-22T05:15:39-0500' p5.26-mozilla-ca @20180117_0 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:17:57-0500' p5.26-net-libidn @0.120.0_5 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:58-0500' p5.26-net-smtp-ssl @1.40.0_0 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:18:10-0500' p5.26-net-ssleay @1.850.0_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:09-0500' p5.26-sub-uplevel @0.280.0_0 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:17:58-0500' p5.26-term-readkey @2.370.0_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:10-0500' p5.26-term-readkey @2.380.0_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-23T03:29:09-0600' p5.26-test-exception @0.430.0_0 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:17:58-0500' p5.26-test-nowarnings @1.40.0_1 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:17:58-0500' p5.26-test-warn @0.360.0_0 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:17:58-0500' p11-kit @0.23.12_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:12-0500' p11-kit @0.23.14_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:31:25-0500' p11-kit @0.23.15_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-23T03:29:51-0600' pcre @8.42_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:41-0500' pcre2 @10.31_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:11-0500' pcre2 @10.32_0 (active) platform='darwin 17' archs='x86_64' date='2018-10-26T22:30:09-0500' perl5 @5.26.1_0+perl5_26 (active) platform='darwin 17' archs='noarch' date='2018-08-08T17:25:27-0500' perl5.26 @5.26.2_1 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:49-0500' perl5.26 @5.26.3_2 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:53:02-0600' pinentry-mac @0.9.4_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:33-0500' pkgconfig @0.29.2_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:33-0500' popt @1.16_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:27-0500' pth @2.0.7_1 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:15-0500' python2_select @0.0_2 platform='darwin 17' archs='noarch' date='2018-08-08T17:18:19-0500' python2_select @0.0_3 (active) platform='darwin 17' archs='noarch' date='2018-10-26T22:29:48-0500' python27 @2.7.15_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:23-0500' python27 @2.7.15_1 platform='darwin 17' archs='x86_64' date='2018-10-26T22:29:50-0500' python27 @2.7.16_0 platform='darwin 17' archs='x86_64' date='2019-03-22T05:15:26-0500' python27 @2.7.16_1 (active) platform='darwin 17' archs='x86_64' date='2019-04-02T00:38:02-0500' python_select @0.3_7 platform='darwin 17' archs='noarch' date='2018-08-08T17:18:20-0500' python_select @0.3_8 (active) platform='darwin 17' archs='noarch' date='2018-10-26T22:29:47-0500' qt4-mac @4.8.7_7 platform='darwin 17' archs='x86_64' date='2018-08-08T17:28:09-0500' qt4-mac @4.8.7_8 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T11:02:58-0600' readline @7.0.003_1 platform='darwin 17' archs='x86_64' date='2018-08-08T17:17:46-0500' readline @7.0.005_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:29:46-0500' readline @8.0.000_0 (active) platform='darwin 17' archs='x86_64' date='2019-02-07T02:43:03-0600' rpl @1.4.1_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:09-0500' rsync @3.1.3_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:28-0500' sloccount @2.26_0 (active) platform='darwin 17' archs='x86_64' date='2019-02-16T11:32:55-0600' sqlite3 @3.24.0_1 platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:20-0500' sqlite3 @3.25.2_0 platform='darwin 17' archs='x86_64' date='2018-10-26T22:29:47-0500' sqlite3 @3.25.3_0 platform='darwin 17' archs='x86_64' date='2018-11-21T19:06:48-0600' sqlite3 @3.26.0_0 platform='darwin 17' archs='x86_64' date='2019-01-06T10:53:14-0600' sqlite3 @3.27.1_0 platform='darwin 17' archs='x86_64' date='2019-02-16T11:23:32-0600' sqlite3 @3.27.2_0 (active) platform='darwin 17' archs='x86_64' date='2019-03-22T05:14:43-0500' tcp_wrappers @20_2 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:25:28-0500' tiff @4.0.9_0 platform='darwin 17' archs='x86_64' date='2018-08-08T17:27:30-0500' tiff @4.0.10_1 (active) platform='darwin 17' archs='x86_64' date='2018-11-21T19:07:41-0600' xz @5.2.4_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:18:28-0500' zlib @1.2.11_0 (active) platform='darwin 17' archs='x86_64' date='2018-08-08T17:10:45-0500' zstd @1.3.7_0 platform='darwin 17' archs='x86_64' date='2018-11-21T19:07:40-0600' zstd @1.3.8_0 (active) platform='darwin 17' archs='x86_64' date='2019-01-06T10:46:44-0600'

zoglauer commented 5 years ago

Hi Micheal,

I can reproduce it. However, it seems to be a known macports issue. See here: https://trac.macports.org/ticket/58350

I worked around it by uninstalling libxml2 before setting up MEGAlib: sudo port uninstall libxml2 bash setup.sh and reinstalling it afterwards. sudo port install libxml2

Best, Andreas

GammaMichael commented 5 years ago

Hello Andreas,

That worked.   ROOT compiled and I successfully compiled MEGAlib with no further issues. Thanks very much for you help.

Best, Michael

On 4/21/19 1:44 PM, zoglauer wrote:

Hi Micheal,

I can reproduce it. However, it seems to be a known macports issue. See here: https://trac.macports.org/ticket/58350

I worked around it by uninstalling libxml2 before setting up MEGAlib: |sudo port uninstall libxml2| |bash setup.sh| and reinstalling it afterwards. |sudo port install libxml2|

Best, Andreas

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Michael S. Briggs University of Alabama in Huntsville Michael.Briggs@uah.edu 256-961-7667 Principal Research Scientist Deputy PI, Fermi Gamma-ray Burst Monitor (GBM) Assistant Director, The Center for Space Plasma and Aeronomic Research (CSPAR)