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zotero / translation-server

A Node.js-based server to run Zotero translators
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/search does not support PubMed IDs prefixed with `pmid:` #71

Closed dhimmel closed 5 years ago

dhimmel commented 5 years ago

The following identifiers are able to be searched:

doi:10.1371/journal.pcbi.1006561 arxiv:1604.05363v1 isbn:97813399198811

However, pmid:30571677 does not succeed, but rather requires no prefix like 30571677. If pmid: prefix is applied, translation-server returns No identifiers found. Query below:

curl \
  --header "Content-Type: text/plain" \
  --data '30571677' \
  'https://translate.manubot.org/search'

Would it make sense to support a pmid: prefix, as well as a pmcid: prefix if PMCID support is added? For users that know what type of ID they are passing, it is preferable to prevent translation-server from guessing the identifier type.

dstillman commented 5 years ago

It's actually not really parsing/enforcing any of those other ones — those formats are all just identifiable without prefixes. PMIDs, too, are just extracted regardless of a colon-terminated prefix, but since they're just generic numbers, there was some stricter logic that caused it to skip extracted PMIDs that didn't match the full input string. I've relaxed that in 5848d9e to allow a "pmid:" prefix.

(I've also fixed an issue that was causing PMIDs to be queried in Crossref first unnecessarily.)