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zqgao22 / HIGH-PPI

MIT License
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Questions about the Data Processing for New Datasets #4

Open YidongSong opened 1 year ago

YidongSong commented 1 year ago

Hello Ziqi, we have some issues about the data processing for new datasets. 1) We used ID in ensp_uniprot.txt to download native protein structures, but we discovered that over 600 native protein structures cannot be found. Could you please provide the address of the native protein structures or can you provide the detailed process of data processing, thanks. 2) We used "generate_adj.py" and "generate_feat.py" to process the downloaded native protein structures, but found that they did not match. Is there any problem that needs to be remedied? Thank you.

yzf0304 commented 10 months ago

Hello songyidong，I would like to kindly inquire if the data processing issue that you mentioned earlier has been resolved. Thank you.