run demuxlet within the snakemake pipeline

zrcjessica / demux

A Snakemake pipeline for running single-cell demultiplexing simulations.

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run demuxlet within the snakemake pipeline #7

Closed aryarm closed 4 years ago

aryarm commented 4 years ago

@zrcjessica: merge this before PR #6

This PR officially adds demuxlet to the Snakemake pipeline. It also adds a step for sorting, since the BAM needs to be properly sorted before going through demuxlet.