Just wonder if there's any option to compare bam files. I tried to write to script for that purpose. With the neat version of fastq, there is huge difference (the absolute distance of mapped positions) between golden bam given by neat and bam from bwa. But with art-simulated fastq as input, the bam from bwa is very close to the true bam.
Hi,
Just wonder if there's any option to compare bam files. I tried to write to script for that purpose. With the neat version of fastq, there is huge difference (the absolute distance of mapped positions) between golden bam given by neat and bam from bwa. But with art-simulated fastq as input, the bam from bwa is very close to the true bam.
Thanks a lot!
-Han