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zstephens / neat-genreads

NEAT read simulation tools
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ValueError: invalid literal for int() with base 10: '1.0086e+06' #66

Closed schmeing closed 4 years ago

schmeing commented 4 years ago

Hi, for another genome I got this error during GC bias computation:

Traceback (most recent call last):
  File "utilities/computeGC.py", line 78, in <module>
    currentCov  += int(splt[2])
ValueError: invalid literal for int() with base 10: '1.0086e+06'

This should be easy to fix, large values seem to be written in float notation from bedtools genomecov, so computeGC should read in floats there.

Thanks

zstephens commented 4 years ago

Good catch! Fixed in https://github.com/zstephens/neat-genreads/commit/9ea1e225f0e19b68ca2f7fe145d7879d3fad421d