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zstephens / neat-genreads

NEAT read simulation tools
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Plot failed #97

Open yangyxt opened 3 years ago

yangyxt commented 3 years ago

Describe the bug Plot failed with unmatched dimensions

To Reproduce Cannot reproduce the error without the input fastq files.

Expected behavior Fix the error

Screenshots ''' Traceback (most recent call last): File "/paedyl01/disk1/yangyxt/ngs_scripts/neat-genreads/utilities/genSeqErrorModel.py", line 298, in main() File "/paedyl01/disk1/yangyxt/ngs_scripts/neat-genreads/utilities/genSeqErrorModel.py", line 250, in main (init_q, prob_q, avg_err1) = parse_file(infile, real_q, off_q, max_reads, n_samp, plot_stuff) File "/paedyl01/disk1/yangyxt/ngs_scripts/neat-genreads/utilities/genSeqErrorModel.py", line 163, in parse_file mpl.pcolormesh(x, y, z[::-1, :], vmin=v_min_log[0], vmax=v_min_log[1], cmap='jet') File "/home/yangyxt/anaconda3/envs/neat_genreads/lib/python3.9/site-packages/matplotlib/pyplot.py", line 2980, in pcolormesh __ret = gca().pcolormesh( File "/home/yangyxt/anaconda3/envs/neat_genreads/lib/python3.9/site-packages/matplotlib/init.py", line 1361, in inner return func(ax, *map(sanitize_sequence, args), *kwargs) File "/home/yangyxt/anaconda3/envs/neat_genreads/lib/python3.9/site-packages/matplotlib/axes/_axes.py", line 6183, in pcolormesh X, Y, C, shading = self._pcolorargs('pcolormesh', args, File "/home/yangyxt/anaconda3/envs/neat_genreads/lib/python3.9/site-packages/matplotlib/axes/_axes.py", line 5697, in _pcolorargs raise TypeError('Dimensions of C %s are incompatible with' TypeError: Dimensions of C (42, 42) are incompatible with X (151) and/or Y (43); see help(pcolormesh) '''

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