Closed Jokendo-collab closed 2 weeks ago
Greetings! I just added a make_telogator_ref.py
script to the repository, which should allow you to make a subtelomere reference that Telogator2 can accept via the -t
input option. Example usage:
python make_telogator_ref.py -i input-ref.fa -o output-telogator-ref.fa -s zebrafish
Note that if zebrafish has different telomere repeats (or variant repeats) than human, you might need to make an alternate kmers.tsv file.
Closing this for now, feel free to reopen if you have additional questions.
I find this tools interesting and I would like to use it in my zebrafish assembly. How can I generate a
telogator.fa
for my zebrafish data? I see it is loading humantelogator.fa
and this could not work well with my data. I look forward to your advise on how to do this.