Closed gitdxj closed 1 year ago
Hi @gitdxj, thanks for your interest in our work. The inference sample size is controlled by https://github.com/zudi-lin/pytorch_connectomics/blob/master/configs/NucMM/NucMM-Mouse-Base.yaml#L34, so there should not be uncovered pixels. Let me know if you have any questions.
Hi @zudi-lin. Your are right. I just checked https://github.com/zudi-lin/pytorch_connectomics/blob/c2c2ab3ae342d3aabd5b474302dee500ef0f6574/connectomics/config/utils.py#L66. It shows the MODEL.INPUT_SIZE is set to be the same as INFERENCE.INPUT_SIZE in inference mode. Thanks for your reply.
In
configs/NucMM/NucMM-Mouse-Base.yaml
, MODEL.INPUT_SIZE is [33, 97, 97] and INFERENCE.STRIDE is [26, 128, 128] . Doesn't this gap between the model input size and inference stride lead to some pixels uncovered during the test stage?