Error with sesameDataCache()

[ardan33]

I previously ran sesame no problem with version 3.17. However, since updating to version 3.18, I am having issues with the sesameDataCache() function.

This is the code I ran: `if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install(version="3.18") BiocManager::install("sesame", force=TRUE) BiocManager::install("sesameData", force=TRUE)

BiocManager::install("ExperimentHub", force=TRUE) BiocManager::install("BiocFileCache", force=TRUE) getwd() sessionInfo() library(sesame) sesame_checkVersion() library(sesameData) sesameDataCache()

This is the error message when I run the last 3 lines : sesame_checkVersion() SeSAMe requires matched versions of R, sesame, sesameData and ExperimentHub. Here is the current versions installed: R: 4.3.1 Bioconductor: 3.18 sesame: 1.20.0 sesameData: 1.20.0 ExperimentHub: 2.10.0

library(sesameData) sesameDataCache() Metadata (N=91):

ExperimentHub Caching fails: error in evaluating the argument 'x' in selecting a method for function 'query': Failed to collect lazy table. Caused by error in db_collect(): ! Arguments in ... must be used. ✖ Problematic argument: • ..1 = Inf ℹ Did you misspell an argument name?

I have no idea how to fix this... as I am extremely new to R. Any help would be appreciated.

[seq101]

@zwdzwd sesameDataCache() seems to be a trending issue!

[zwdzwd]

I am not sure. I just deleted my ~/Library/Caches/org.R-project.R/R/ExperimentHub/ and rerun sesameDataCache() again on my mac with the following version (which is the closest I can find to the post above) and it seems to work fine. Not sure if it's specific to Windows?

R: 4.3.2
Bioconductor: 3.18
sesame: 1.20.0
sesameData: 1.20.0
ExperimentHub: 2.10.0

[ardan33]

I got this fixed a while ago. I don't remember how I fixed it now, but it seems to be working fine now!