I am trying to estimate cell composition using reference data obtained using the 'getRefSet' function. I run the following line,
tmp <- estimateCellComposition(g=ref, q=dat) # dat is methylation profile of 275955 CpGs in a sample (=nrow(ref)).
However, I am getting 'could not find function "estimateCellComposition' error message. I am not able to understand the error because sesame package is loaded as you can see below in the output from sessionInfo(),
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
Hi,
I am trying to estimate cell composition using reference data obtained using the 'getRefSet' function. I run the following line,
tmp <- estimateCellComposition(g=ref, q=dat) # dat is methylation profile of 275955 CpGs in a sample (=nrow(ref)).
However, I am getting 'could not find function "estimateCellComposition' error message. I am not able to understand the error because sesame package is loaded as you can see below in the output from sessionInfo(),
attached base packages: [1] parallel stats graphics grDevices utils datasets methods [8] base
other attached packages: [1] sesame_1.20.0 sesameData_1.20.0 ExperimentHub_2.8.1 [4] AnnotationHub_3.10.0 BiocFileCache_2.10.1 dbplyr_2.4.0 [7] BiocGenerics_0.46.0
Would appreciate for any help!