Error importing illumina mouse methylation array idat files

zwdzwd / sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

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Error importing illumina mouse methylation array idat files #17

Closed OluwayioseOA closed 3 years ago

OluwayioseOA commented 3 years ago

Hey. I'm having trouble importing illumina mouse methylation Idat files using openSesame function (openSesame(idat_dir, 'custom_array_name', manifest_file)). I keep getting the error ("Unknown or uninitialised column: col") despite downloading the new mouse manifest directly from the illumina website. I wonder if any modification is needed for the manifest to work.

zwdzwd commented 3 years ago

Do you still get this issue with the updated 1.9+ versions?

zwdzwd commented 3 years ago

I think this should've been fixed. Let me know if this recurs with the new versions.