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zwdzwd / transvar

TransVar - multiway annotator for precision medicine
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use custom config path and use memory map files to speed up genomereference retrival #2

Closed jordeu closed 8 years ago

jordeu commented 8 years ago

This pull requests adds two small features:

  1. If the user defines the OS environment variable "TRANSVAR_CFG", this path will be used instead of the default "~/.transvar.cfg"
  2. Use memory map to speed up the genome reference retrival. We've tested and this speeds up transvar around ~10% when running big files.
zwdzwd commented 8 years ago

Thanks. This looks great.