Open LiviaMoura opened 2 years ago
Hi @LiviaMoura did you find a solution for this problem? I am also seeing the same issue!
Hi both @SophieS9 and @LiviaMoura,
Maybe you should find your transvar.cfg
(config file)
=> For @LiviaMoura, path should be like : "/Users/liviamoura/.pyenv/versions/3.6.13/lib/python3.6/site-packages/transvar/transvar.cfg"
=> Otherwise use find /path/to/install/transvar -name "transvar.cfg"
Then you open it with an editor and check for line reference =
of your wanted assembly (add it if absent)
=> There you should put the path towards a FASTA corresponding to your assembly (it should be indexed too)
I have not tried it myself but I think you can also use transvar config --refversion hg19/hg38 --download_ref
Hope this helps ! Have a nice day. Felix.
Hello... I just installed transvar and I followed the Quick starting Guide
It seems that the reference isn't being downloaded (arrow below)