hi - in case this is checked by the developers, we are using a lot TransVar as it is such a great tool! all the praise for Wanding!
So - an issue that we recently found is that -unless we are doing something wrong- it seems that TransVar does not process inversions (ie it returns an empty result), for instance:
$ transvar ganno -i 'X:g.32386323_32386325inv' --ensembl --gseq
input transcript gene strand coordinates(gDNA/cDNA/protein) region info CHROM POS REF ALT
hi - in case this is checked by the developers, we are using a lot TransVar as it is such a great tool! all the praise for Wanding!
So - an issue that we recently found is that -unless we are doing something wrong- it seems that TransVar does not process inversions (ie it returns an empty result), for instance:
$ transvar ganno -i 'X:g.32386323_32386325inv' --ensembl --gseq input transcript gene strand coordinates(gDNA/cDNA/protein) region info CHROM POS REF ALT
is there a solution for that?
thanks in advance! /david