Why your LM22 file is different from the file downloaded from CIBERSORT?

zwj-tina / GEPIA2021

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Why your LM22 file is different from the file downloaded from CIBERSORT? #1

Open fydman opened 3 years ago

fydman commented 3 years ago

Hi I am confused. Why your LM22 file is so bigger than the file downloaded from CIBERSORT? 512 LM22.txt 6400 LM22fromGEPIA.txt Thanks!

hxretlcw commented 2 years ago

We used the defaul LM22 (the smaller one) to deconvolute the bulk samples, and used the complete LM22 reference to perform the sub-expression analysis for more genes, which were also downloaded from the CIBERSORT website.