zy-optimistic
commented
1 year ago 高版本perl造成的语法不兼容，你可以把/home/software/GAEP/scripts/summary.pl的271行替换成： ”for (sort {$a <=> $b} keys %{$table->{$layer}}) {“ 再重新运行“perl /home/software/GAEP/scripts/summary.pl ./gaep_output_22710 gaep_output 57931 > ./gaep_output_22710/gaep_output_gaep_summary.html”。
我们稍后会在更新版本中修复这个问题。
..... [gaep pipe] 2023-5-3 4:40:7 Now running samtools flagstat to gain mapping rate of tgs data. [gaep pipe] 2023-5-3 4:40:15 Running completed!
perl /home/software/GAEP/scripts/summary.pl ./gaep_output_22710 gaep_output 57931 > ./gaep_output_22710/gaep_output_gaep_summary.html Experimental keys on scalar is now forbidden at /home/software/GAEP/scripts/summary.pl line 271. Type of arg 1 to keys must be hash or array (not hash element) at /home/software/GAEP/scripts/summary.pl line 271, near "}) " Execution of /home/software/GAEP/scripts/summary.pl aborted due to compilation errors. [gaep pipe] GAEP summary failed.
[gaep pipe] 2023-5-3 4:40:16 GAEP summary failed.
最近在跑这个GAEP，报错提示信息如上，请问该怎么纠正？？