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zy-optimistic / GAEP

A genome assembly assessment pipeline.
GNU General Public License v3.0
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What is the reason for this error? thanks #7

Closed ZhouTaoWang closed 1 year ago

ZhouTaoWang commented 1 year ago

/home/wzt001/software/bcftools/bin/bcftools filter -e '%QUAL<10 || DP <= 3' ./gaep_output_2295917/variants_calling//PC.Chr7.vcf -o ./gaep_output_2295917/variants_calling//PC.Chr7.flt.vcf Error occurred while processing the filter "%QUAL<10 || DP <= 3" (1:1) Thread 7 terminated abnormally: [var_calling] Can't run "/home/wzt001/software/bcftools/bin/bcftools filter -e '%QUAL<10 || DP <= 3' ./gaep_output_2295917/variants_calling//PC.Chr7.vcf -o ./gaep_output_2295917/variants_calling//PC.Chr7.flt.vcf".

yeeus commented 1 year ago

I also have encountered this error, how do you solve this problem please?

H2023-L commented 9 months ago

I also have encountered this error, how do you solve this problem please?

I also have encountered this error, have you solved this problem? Could you share the solution with me please?

yeeus commented 9 months ago

I also have encountered this error, how do you solve this problem please?

I also have encountered this error, have you solved this problem? Could you share the solution with me please?

I didn't.