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zyndagj / BSMAPz

Updated and optimized fork of BSMAP
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bsmap bigwig format #5

Closed dorothyzh closed 6 years ago

dorothyzh commented 6 years ago

Can bsmap produce a bigwig file including positive (F-strand) and negative (R-strand) of methylation ratio?

Thanks,

zyndagj commented 6 years ago

That's extra post-processing that you'll need to do on your own.

It should be somewhat straightforward after you produce the methratio file with methratio.py, which outputs methylation values along with position, context, and strand.

dorothyzh commented 6 years ago

Great thanks

Huan

On Mon, Jun 11, 2018 at 10:17 PM, Greg Zynda notifications@github.com wrote:

Closed #5 https://github.com/zyndagj/BSMAP/issues/5.

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Best Regards,

Huan ZHONG