Use repeatmasker to detect transposable elements

zyndagj / RNNotate

BSD 3-Clause "New" or "Revised" License

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Use repeatmasker to detect transposable elements #4

Closed zyndagj closed 5 years ago

zyndagj commented 5 years ago

Both Ensembl and Phytozome strip out all repetitive elements from their annotations. I have been pulling the unmasked references, so I will try detecting similar repeats with the repbase library.

zyndagj commented 5 years ago

No longer going to rely on repeat masker that I run myself.