Dear Zyxue,
I am trying to install the program but getting the following error message. My python version is 3.10.2.
Keyring is skipped due to an exception: module 'collections' has no attribute 'MutableMapping'
Defaulting to user installation because normal site-packages is not writeable
Collecting ncbitax2lin
Using cached ncbitax2lin-2.2.0-py3-none-any.whl (10 kB)
Collecting pandas<2.0.0,>=1.0.3
Using cached pandas-1.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.7 MB)
Collecting typing-extensions<4.0.0,>=3.7.4
Using cached typing_extensions-3.10.0.2-py3-none-any.whl (26 kB)
Collecting fire<0.4.0,>=0.3.1
Using cached fire-0.3.1.tar.gz (81 kB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [20 lines of output]
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 14, in <module>
File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 12, in <module>
import setuptools.version
File "/usr/lib/python3/dist-packages/setuptools/version.py", line 1, in <module>
import pkg_resources
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 77, in <module>
__import__('pkg_resources.extern.packaging.requirements')
File "/usr/lib/python3/dist-packages/pkg_resources/_vendor/packaging/requirements.py", line 9, in <module>
from pkg_resources.extern.pyparsing import stringStart, stringEnd, originalTextFor, ParseException
File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
File "<frozen importlib._bootstrap>", line 1006, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 672, in _load_unlocked
File "<frozen importlib._bootstrap>", line 632, in _load_backward_compatible
File "/usr/lib/python3/dist-packages/pkg_resources/extern/__init__.py", line 43, in load_module
__import__(extant)
File "/usr/lib/python3/dist-packages/pkg_resources/_vendor/pyparsing.py", line 943, in <module>
collections.MutableMapping.register(ParseResults)
AttributeError: module 'collections' has no attribute 'MutableMapping'
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
Hey binitl, ncbitax2lin doesn't support python-3.10 yet, but I just updated it to support python-3.9, could you py39 instead? Make sure to get the latest version with pip install -U ncbitax2lin
Dear Zyxue, I am trying to install the program but getting the following error message. My python version is 3.10.2.