zztin / cellfree

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[new feature] cmd all.py end_motif.py build feature table #14

Closed zztin closed 2 years ago

zztin commented 2 years ago

Build feature table per bam file molecules and add option to add customized label to feature table. Feature table is stored as pickle.gz and tsv with user defined path and filename SAMPLE.suffix

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Test are failing but no new test are built for this PR. Push with --no-verify option

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zztin commented 2 years ago

Still need to add test cases.

zztin commented 2 years ago

We can consider using the bed file format to store feature matrix. https://en.wikipedia.org/wiki/BED_(file_format)#Format