zzz2010 / centdist

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install JASPAR database #2

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago
CENTDIST use mainly TRANSFAC. It would be beneficial, although not necessary 
for this manuscript, to include also support for JASPAR, a freely accessible 
resource for PWM. For example, the authors claim a PWM for Klf4 is not present 
in TRANSFAC, but it is for example present in JASPAR (sometimes is the 
contrary). Sure, this limitation may be diminished if JASPAR motifs can be used 
as a custom PWM, as implemented in the server. However, converting JASPAR motif 
as obtained from the JASPAR we server seems not to be trivial. Therefore, 
although enabling for custom PWM is a nice add, giving support to an important 
resource like JASPAR could be very helpful.

Original issue reported on code.google.com by zzz2...@gmail.com on 29 Mar 2011 at 4:32

GoogleCodeExporter commented 9 years ago
finished

Original comment by zzz2...@gmail.com on 29 Mar 2011 at 4:46

GoogleCodeExporter commented 9 years ago

Original comment by zzz2...@gmail.com on 29 Mar 2011 at 4:47

GoogleCodeExporter commented 9 years ago

Original comment by zzz2...@gmail.com on 29 Mar 2011 at 4:51