CENTDIST use mainly TRANSFAC. It would be beneficial, although not necessary
for this manuscript, to include also support for JASPAR, a freely accessible
resource for PWM. For example, the authors claim a PWM for Klf4 is not present
in TRANSFAC, but it is for example present in JASPAR (sometimes is the
contrary). Sure, this limitation may be diminished if JASPAR motifs can be used
as a custom PWM, as implemented in the server. However, converting JASPAR motif
as obtained from the JASPAR we server seems not to be trivial. Therefore,
although enabling for custom PWM is a nice add, giving support to an important
resource like JASPAR could be very helpful.
Original issue reported on code.google.com by zzz2...@gmail.com on 29 Mar 2011 at 4:32
Original issue reported on code.google.com by
zzz2...@gmail.com
on 29 Mar 2011 at 4:32