guanjue
commented
2 years ago The following are the compile outputs: (just in case it is needed)
TwoRegions_baseline.c: In function ‘score_baseline’:
TwoRegions_baseline.c:12:8: warning: implicit declaration of function ‘strcmp’ [-Wimplicit-function-declaration]
if(strcmp(fit_model,"normal")==0){
^~
DatabaseSearch_baseline1.c: In function ‘pick_sseq’:
DatabaseSearch_baseline1.c:122:5: warning: ‘return’ with no value, in function returning non-void
return;
^~
DatabaseSearch_baseline1.c:120:5: note: declared here
int pick_sseq(unsigned char sseq, unsigned char sseq_num, int n, unsigned char sseq_out, unsigned char sseq_num_out, int l, int u)
^~~~~
NonOverlapTopK.c: In function ‘main’:
NonOverlapTopK.c:86:13: warning: argument 1 value ‘18446744073705551620’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
Lmatrix = (int)malloc(sizeof(int)hmax);
In file included from NonOverlapTopK.c:2:0:
/usr/include/stdlib.h:465:14: note: in a call to allocation function ‘malloc’ declared here
extern void *malloc (size_t __size) __THROW __attribute_malloc__ __wur;
^~~~~~
NonOverlapTopK.c:97:18: warning: argument 1 value ‘18446744073701551624’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
score_matrix = (float**)malloc(sizeof(float*)*hmax);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from NonOverlapTopK.c:2:0:
/usr/include/stdlib.h:465:14: note: in a call to allocation function ‘malloc’ declared here
extern void *malloc (size_t __size) __THROW __attribute_malloc__ __wur;
^~~~~~
NonOverlapTopK.c:98:22: warning: argument 1 value ‘18446744073701551624’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
score_matrix_ori = (float**)malloc(sizeof(float*)*hmax);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from NonOverlapTopK.c:2:0:
/usr/include/stdlib.h:465:14: note: in a call to allocation function ‘malloc’ declared here
extern void *malloc (size_t __size) __THROW __attribute_malloc__ __wur;
^~~~~~
zzz3639
Hi,
Thank you for provide this package to the community. I have tried it compile with the "CustomFunction.Naive.c". It works great.
However, when I compiled with "CustomFunction.Attention.c", the TwoRegions.out just stop working on the testing data.
Here are the command I used on the testing seq1 seq2 data, and the error: ../bin/TwoRegions.out seq1 seq2 para Segmentation fault (core dumped)
I wonder if there is anyway I can fix this error? Thanks
Best wishes. Guanjue