10XGenomics thermite issues

10XGenomics / thermite

Spliced short read aligner implemented in Rust

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issues

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Add count matrix metrics notebook

#27 emreerhan opened 3 years ago
2
Various optimizations

#26 Daniel-Liu-c0deb0t opened 3 years ago
18
Cellranger integration

#25 Daniel-Liu-c0deb0t closed 3 years ago
8
New metrics and new data

#24 emreerhan closed 3 years ago
12
Use buffered IO for bincode serde

#23 Daniel-Liu-c0deb0t closed 3 years ago
1
Ignore everything after the first space in reference fasta

#22 Daniel-Liu-c0deb0t closed 3 years ago
1
Fixes for alignment scoring

#21 Daniel-Liu-c0deb0t closed 3 years ago
1
Cellranger Integration

#20 Daniel-Liu-c0deb0t closed 3 years ago
12
Add new metrics, chr21 dataset, and update chrM dataset

#19 emreerhan closed 3 years ago
1
Use sampled suffix array

#18 Daniel-Liu-c0deb0t closed 3 years ago
9
Handle multimapping by allowing multiple alignment outputs

#17 Daniel-Liu-c0deb0t closed 3 years ago
4
Automated PR comments

#16 emreerhan closed 3 years ago
2
[WIP] Adding black, pylint and automated script running on PR

#15 emreerhan closed 3 years ago
0
Trancriptome alignment and alignment liftover

#14 Daniel-Liu-c0deb0t closed 3 years ago
9
SAM/BAM format support for alignment outputs

#13 Daniel-Liu-c0deb0t closed 3 years ago
1
Add alignment metrics script

#12 emreerhan closed 3 years ago
2
Cargo.toml: Remove cargo-features = ["resolver"]

#11 sjackman closed 3 years ago
0
Add gh action workflow

#10 emreerhan closed 3 years ago
1
BAM/SAM output

#9 Daniel-Liu-c0deb0t closed 3 years ago
0
Better CLI

#8 Daniel-Liu-c0deb0t closed 3 years ago
0
Remove unused imports

#7 sjackman closed 3 years ago
0
Add Cargo.lock

#6 sjackman closed 3 years ago
0
Add data/Makefile

#5 sjackman closed 3 years ago
0
Cargo.toml: Optimize debug by default

#4 sjackman closed 3 years ago
0
Add #![deny(warnings)]

#3 sjackman closed 3 years ago
0
MVP

#2 Daniel-Liu-c0deb0t closed 3 years ago
0
Plan

#1 sjackman opened 3 years ago
2