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2017-iEvoBio / organization

Logistical details, Suggestions for discussion topics, Agenda
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Software Bazaar: phangorn #36

Open KlausVigo opened 7 years ago

KlausVigo commented 7 years ago

Software Bazaar: phangorn

Authors: Klaus Schliep, Emmanuel Paradis, Leonardo de Oliveira Martins, Alastair Potts, Tim W. White, Cyrill Stachniss, Michelle Kendall Source code: CRAN, github License: GPL (>= 2) Abstract: phangorn is an all-purpose phylogentic R package to perform phylogentic analysis like maximum likelihood, maximum parsimony or distance based methods. phangorn contains some low level function extending the ape package for tree manipiulations or simulation of sequences. phangorn is designed to make it easy to exchange data with many other common R packages on CRAN or Bioconductor. A strength of the package are the tools to explore phylogenetic incongruence using different tree metrics (e.g. Kuhner-Felsenstein, (weighted) Robinson-Foulds, SPR-distance) and to visualize the conflict signals in form with splits networks. Five vignettes describing common work flows and more information and examples are available on http://www.phangorn.org/.

k8hertweck commented 7 years ago

Thank you for your submission to the Software Bazaar! We've included you on the list of presenters for June 24, 6-8 pm (same time and place as first Evolution poster session). There will be tables, power sources, and signs available. Please let us know if you have any questions!