465b nemf issues - Githubissues

465b / nemf

A novel three step network-based general ecosystem modeling framework

BSD 3-Clause "New" or "Revised" License

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Change print statement when loading model

#95 465b closed 3 years ago
0
get rid of the X,idx_A,idx_B of the doc of interaction functions?

#94 465b opened 3 years ago
0
doc of nutrient limited growth is wrong

#93 465b closed 3 years ago
0
alternative time scales for plots

#92 465b opened 3 years ago
0
Add dependancy on environmental in interactions

#91 465b opened 3 years ago
0
rename holling_type_0_inverse

#90 465b opened 3 years ago
1
load_model() is wront in doc example

#89 465b closed 3 years ago
1
Add the option to enforce non-negativity for compartments

#88 465b opened 4 years ago
0
Add option to pass kwargs to forward_model()

#87 465b opened 4 years ago
0
Empty compartments become "recreated" even tho interactions wouldn't allow that

#86 465b opened 4 years ago
0
Multi source interaction

#85 465b opened 4 years ago
0
bug: wrong error message if verbose = False

#84 465b closed 4 years ago
1
doc: inconsistencies

#83 465b closed 4 years ago
1
doc: add excel (xlmx) example

#82 465b opened 4 years ago
0
YAML overhaul

#81 465b opened 4 years ago
0
Bounds of Interaction parameters are parsed as a set instead of a list

#80 465b closed 4 years ago
0
DOC: Talk about time steps in seconds

#79 465b opened 4 years ago
0
bad method of importing with keys

#78 465b closed 4 years ago
1
add load_reference_data() to api doc

#77 465b closed 4 years ago
0
In load_model(), ref_data_path parameter not optional

#76 465b closed 4 years ago
1
wrong key in load_reference_data when imported from yaml

#75 465b closed 4 years ago
1
Check discrepency between the fitting quality

#74 465b opened 4 years ago
0
faulty docstring in holling III

#73 465b closed 4 years ago
0
Parameters not plottet properly

#72 465b closed 4 years ago
1
Write error message for - IndexError: If fitting parameters are compartments

#71 465b opened 4 years ago
1
negative ODE's

#70 465b closed 4 years ago
1
fix timestamp in excel input

#69 465b closed 4 years ago
0
yaml compartment parsing is inconsistent.

#68 465b closed 4 years ago
1
make example accessible for user in python

#67 465b opened 4 years ago
0
make example work in packaged version

#66 465b closed 4 years ago
1
switch away from "yaml" to either PyYAML or pyaml

#65 465b closed 4 years ago
1
write parser to for csv refdata: datetime -> seconds

#64 465b opened 4 years ago
1
"update_system_with_parameters" only correctly updates compartments

#63 465b closed 4 years ago
1
automatize the construction of the "constraints" object for coupled optimization

#62 465b opened 4 years ago
0
ReadTheDocs-Sphinx integration seems broken

#61 465b closed 4 years ago
1
Add a method to export/save data from the framework

#60 465b closed 4 years ago
1
add t_eval to model.config['t_eval']?

#59 465b closed 4 years ago
1
adjust interaction graph to new sign'less interactions

#58 465b closed 4 years ago
0
add time column with posix for time integration log data

#57 465b closed 4 years ago
0
add option to log optimizer and time integration data seperatly

#56 465b closed 4 years ago
1
re-add *steady-state* solution finder for scipy integration

#55 465b closed 4 years ago
0
add data unification scripts

#54 465b closed 4 years ago
1
add import ref_data function to model class

#53 465b closed 4 years ago
0
user defined functions do not appear to be part of globals() or locals()

#52 465b closed 4 years ago
1
add sphinx & readthedocs documentation for a more detailed documentation

#51 465b closed 4 years ago
0
Add interaction plot call to README example

#50 465b closed 4 years ago
0
Rename model_class() function to something like import_model()

#49 465b closed 4 years ago
0
Rename interaction functions variables to be more verbose

#48 465b opened 4 years ago
0
Add install notes for windows users

#47 465b closed 4 years ago
0
shall the framework be usable from the command line?

#46 465b closed 4 years ago
1