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Hi dear DROP team !
We are exploring possibilities to get into aberrant splicing analysis using long read RNA/cDNA sequencing from Nanopore sequencers.
Do you think it is achievable to use the D…
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Hi,
I'm running DROP v1.4.0 on a set of 10 samples, with only the AberrantSplicing and AberrantExpression modules. The AberrantExpression module completes successfully, but I get the following erro…
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Hi,
thank you for a great piece of software. I am trying to use DROP on my cohort of patients, and I had no issues getting the pipeline to complete, however, when I try to specify a subset of genes…
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We are using DROP in undiagnosed rare disease patient cohort. If I understand correctly, the underlying assumption of DROP is that all samples were taken randomly from a population, regardless of the …
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Hello I am receiving this error could you please help
WorkflowError:
MissingInputException: Missing input files for rule markdown:
output: /home/thie0149/toles008/IDF_project/allpilot/Output/…
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We have to rearrange the code so the full pipeline is not rerun each time some little bit changes in the sample annotation file.
Currently, the user-provided sample annotation is the first dependen…
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I was running the drop demo as like this
drop demo
snakemake aberrantExpression --cores 30
But it got error like this
Finished job 13.
16 of 69 steps (23%) done
Loading required packag…
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https://doi.org/10.1101/104869
> Advancements in sequencing technologies have highlighted the role of alternative splicing (AS) in increasing transcriptome complexity. This role of AS, combined wit…
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Hi Gagneur Lab,
I'm having some issues recently when executing DROP (`snakemake aberrantSplicing` in this case). I keep getting the following error:
`WARNING: 7 files missing in samples annota…
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Dear Yuichi,
I am working on a cohort of patients with several samples per patient. The samples were obtained from related specimens (metastases/relapses), so a notable overlap in the genomic varia…