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gagneurlab
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drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
MIT License
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Safe way to rerun crashed pipeline
#559
gevro
closed
22 hours ago
8
Error in checkForAndCreateDir
#558
pkrithivasan
opened
4 days ago
1
read in external hpo_file correctly from snakemake params
#557
AtaJadidAhari
closed
1 week ago
0
Results doubts
#556
mmartinezj
opened
2 weeks ago
0
Can't load fds-object from DROP in R
#555
mmartinezj
closed
2 weeks ago
2
No Overview.html file after aberrantSplicing analysis with DROP v1.4.0
#554
mmartinezj
closed
2 weeks ago
4
QUESTION: specifying samples for sampleExclusionMask in OUTRIDER
#553
Nicholas-Kron
closed
3 weeks ago
2
conda setup using yaml doesn't work
#551
gevro
closed
1 month ago
1
useNames = NA is defunct
#550
gevro
closed
3 weeks ago
4
Pipeline FAILS when specifying subsets of genes to test
#549
GaberBergant
opened
1 month ago
1
Dev minor changes
#548
vyepez88
closed
1 month ago
0
Strand specific counting wrt samples in FRASER
#547
vyepez88
closed
1 month ago
0
Check External gene annot
#546
AtaJadidAhari
opened
1 month ago
0
update version nr to 1.4.0
#545
AtaJadidAhari
closed
1 month ago
0
Freeze version
#544
vyepez88
closed
1 month ago
0
Error in rule AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R
#543
cariocow
closed
1 month ago
2
Pipeline fails with no significant results (AberrantSplicing_pipeline_FRASER_08_extract_results_FraseR_R)
#542
pkrithivasan
closed
3 weeks ago
1
Error in rule AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R
#541
mmartinezj
closed
1 month ago
10
Annotation file asks for columns that shouldn't be needed
#540
mmartinezj
closed
1 month ago
2
Problem running DROP
#539
mmartinezj
closed
1 month ago
2
requirementsR.txt referencing HEAD leads to irreproducibility / pipeline breaking
#538
jaicher
opened
2 months ago
3
Adapt to new FRASER version and fix minor issues
#537
AtaJadidAhari
closed
1 month ago
0
Error in h(simpleError(msg, call))
#536
pkrithivasan
closed
3 weeks ago
8
Writing `rds` files as log can crash Snakemake execution
#535
votti
closed
2 weeks ago
1
Incompatible with `Snakemake>=8`
#534
votti
closed
3 weeks ago
2
Adds space between `#+` and `echo`
#533
votti
closed
2 months ago
0
Chunk options `#+echo` not correctly parsed
#532
votti
closed
1 month ago
1
Default running folder is out of space
#529
hermean
closed
2 months ago
2
CalledProcessError in installRPackages.R
#528
gaynora7
opened
2 months ago
5
Error in MAE QC create matrix dna rna cor
#527
bijuissac
closed
2 months ago
3
Error in AberrantSplicing_pipeline_FRASER_04_fit_hyperparameters_FraseR_R
#526
pkrithivasan
closed
2 months ago
3
Error running aberrantSplicing
#525
pkrithivasan
closed
2 months ago
2
lymphoblastoid cell lines datasets of gene counts
#524
Matteo1988
closed
3 months ago
0
Running pipeline offline in trusted research environemnt
#523
chrisodhams
opened
4 months ago
1
Is there a way to specify sample and controls in runs?
#521
dissakov
closed
4 months ago
10
Does FRASER make any comparisons between genes, or only comparing splicing within a given gene (between sample and controls)?
#520
dissakov
closed
3 weeks ago
1
OOM error in markDuplicates
#519
gianfilippo
closed
4 months ago
3
error in mae
#518
Acetyl-ZHOU
opened
4 months ago
8
Aberrant splicing theta (θ) values width all have the same value
#517
carlalbc
closed
4 months ago
2
error in aberrantExpression module
#516
jfertaj
closed
4 months ago
2
TypeError in file /DATA/drop_demo/Snakefile, line 12: expected str, bytes or os.PathLike object, not NoneType
#515
Acetyl-ZHOU
opened
4 months ago
1
Aberrant Splicing: error in 01_1_countRNA_splitReads_samplewise.R, [,j] index out of bounds
#514
kdewispelaere
closed
4 months ago
1
QC variants are all homozygous causing MAE rule MonoallelicExpression_pipeline_QC_deseq_qc_R to error out
#513
wanqingshao
closed
2 months ago
1
Pipeline runs as expected, but results folder is blank?
#512
dissakov
closed
5 months ago
1
One sample + external data vs multiple samples + external data
#511
gianfilippo
closed
4 months ago
15
DROP installation issue on linux cluster
#510
gianfilippo
opened
5 months ago
1
ImportError: cannot import name 'get_argument_parser' from 'snakemake'
#509
TechLabLgm
closed
5 months ago
3
Annotating results with Ensembl Id or HGNC Id
#508
Lucpen
closed
3 weeks ago
4
AberrantSplicing pipeline error
#507
akhilvelluva
opened
5 months ago
8
micromamba snakemake import error
#506
akhilvelluva
closed
5 months ago
2
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