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- `remove run X data` (or mark as incomplete, `dup`) -- should then rename data for all subsequent runs to account that this run was removed. useful if `run+` etc annotation was used, thus we could n…
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Short description of overarching theme/goals behind BIDS 2.0 . To make BIDS
- **more flexible** as capable to accommodate new fields of neuroscience and use cases and possibly avoid breeding of "BIDS…
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**Description**
When I use this command to convert one subject,
$ clinica convert adni-to-bids /path/to/adni_data /path/to/clinical_data /path/to/output_bids --xml_path /path/to/adni_metadata -m T1 …
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**Describe the bug**
The bids_helper catches an error when the dataset doesn't contain a method file. Even if this is the right behaviour, the script shouldn't break there if I want to convert many d…
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This is a generalization request inspired by
- https://github.com/OpenNeuroOrg/openneuro/pull/3141
Overall, as long as there is a way to ignore arbitrary non-bids compliant files/folders via `.…
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I am now targeting to complete the overhaul by the end of May 2024. Here’s a recap of what we’re working on and the current status:
- [x] **Code Clean-up**: Enhance readability and efficiency of co…
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**Describe the bug**
Hello :) I am trying to convert in BIDS an old dataset acquired with pv 5.1. I created the .csv file and the .json template with bids_helper, but when I tried to convert the data…
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Both dcm2bids and heudiconv have a setup function -
dcm2bids is `dcm2bids_helper`
- not currently implemented in clpipe
heudiconv's is essentially running heudiconv with the base template and n…
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#### What is the problem?
it seems that somewhere paths resolution/matching is happening and symlinks in the path gets resolved but not "consistently", which results in tests failing for me -- don't …
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**Describe the bug**
Hello,
after using the tools to convert a dataset of anatomic and fMRI images acquired with PV5.1 to BIDS, the "PhaseEncodingDirection" field was filed "col_dir" instead of a …