aramis-lab clinica issues

aramis-lab / clinica

Software platform for clinical neuroimaging studies

http://www.clinica.run/

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[ENH] Proposition of a function to translate study ids to bids ids

#1220 AliceJoubert opened 22 hours ago
0
[ENH] Improve tests for bids_utils

#1219 AliceJoubert opened 22 hours ago
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[FIX] ADNI-to-BIDS now takes into account existing scans.tsv

#1218 AliceJoubert opened 23 hours ago
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[FIX] Fix issue with enumeration as default value in CLI

#1217 NicolasGensollen closed 1 day ago
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[MAINT] Bump `requests` from `2.32.0` to `2.32.3`

#1216 NicolasGensollen closed 1 day ago
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[FIX] Fix function `crop_nifti` to perform cropping instead of resampling

#1215 NicolasGensollen closed 1 day ago
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Function `crop_nifti` performs resampling instead of cropping

#1214 NicolasGensollen closed 1 day ago
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[TEST] Mock remote atlases in unit tests

#1213 NicolasGensollen closed 1 week ago
1
Remote atlas unit tests are failing

#1212 NicolasGensollen closed 1 week ago
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Bump scikit-learn from 1.4.0 to 1.5.0

#1211 dependabot[bot] closed 1 week ago
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Bump urllib3 from 2.2.0 to 2.2.2

#1210 dependabot[bot] closed 1 week ago
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[DOC] Online documentation not accessible until early July

#1209 NicolasGensollen closed 1 week ago
1
[REF] BIDS : proposition for function create_participants_df from bids_utils

#1208 AliceJoubert opened 2 weeks ago
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[ENH] Use enumeration for SUVR reference regions

#1207 NicolasGensollen closed 2 weeks ago
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[MAINT] Missing unit tests for bids_utils

#1206 AliceJoubert closed 2 weeks ago
1
[TEST] Update test for nifd-to-bids converter

#1205 NicolasGensollen closed 3 weeks ago
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[MAINT] Remove function BidsGuess

#1204 AliceJoubert closed 3 weeks ago
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[TEST] Update test for aibl-to-bids converter

#1203 NicolasGensollen closed 3 weeks ago
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[TEST] Update test for habs-to-bids converter

#1202 NicolasGensollen closed 3 weeks ago
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[CI] Fix deploy step in documentation pipeline

#1201 NicolasGensollen closed 3 weeks ago
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[REF] BIDS : refactor function `create_participants_df` from `bids_utils`

#1200 AliceJoubert closed 2 weeks ago
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[DOC] ADNI-to-BIDS : add Field Mapping (FMAP) specificities

#1199 AliceJoubert closed 3 weeks ago
1
[FIX] ADNI-to-BIDS fmap conversion : delete real/imaginary files properly, enable converting to the same folder for fmap

#1198 AliceJoubert closed 3 weeks ago
2
The links for installing ITK are broken

#1197 NicolasGensollen opened 4 weeks ago
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[ENH] ADNI-to-BIDS converts only subjects in the provided ADNI directory if no subjects list is given

#1196 AliceJoubert closed 3 weeks ago
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ADNI_to_BIDS utils : `load_clinical_csv`, hidden csv file matching, issue #1163

#1195 HuguesRoy opened 1 month ago
1
[CI] Fix typo in GitHub context variable in documentation deploy pipeline

#1194 NicolasGensollen closed 1 month ago
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[CI] Fix wrong folder name when deploying doc

#1193 NicolasGensollen closed 1 month ago
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[CI] Fix deployed documentation folder names

#1192 NicolasGensollen closed 1 month ago
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[CI] Use Github Actions to build and deploy documentation

#1191 NicolasGensollen closed 1 month ago
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[ENH] Proposition for adni-to-bids converter FMAP renaming

#1190 AliceJoubert closed 1 month ago
3
[BUG] In adni-to-bids, empty sessions files are not cleaned up

#1189 AliceJoubert opened 1 month ago
1
[FIX] Properly deleting real and imaginary files for FMAP in adni-to-bids converter.

#1188 AliceJoubert closed 1 month ago
2
Bump requests from 2.31.0 to 2.32.0

#1187 dependabot[bot] closed 1 month ago
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[ENH] Enable debugging in converters

#1186 NicolasGensollen closed 1 month ago
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[FIX] Fix calls to `matplotlib.cm.get_cmap`

#1185 NicolasGensollen closed 1 month ago
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[FIX] Fix handlers addition to the clinica logger

#1184 NicolasGensollen closed 1 month ago
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Enable debugging for converters using multiprocessing

#1183 NicolasGensollen closed 1 month ago
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Deprecated `get_cmap` function was removed in Matplotlib 3.9.0

#1182 NicolasGensollen closed 1 month ago
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[FIX] Fix logging in adni to bids

#1181 NicolasGensollen closed 1 month ago
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[FIX] Fix inconsistent logging in function `run_dcm2niix`

#1180 NicolasGensollen closed 1 month ago
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Logging of `run_dcm2niix` is not consistent with the conversion result

#1179 NicolasGensollen closed 1 month ago
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Fix logic in adni_utils by restoring loops in create_file

#1178 AliceJoubert closed 1 month ago
2
add "real" and "imaginary" file endings to return fmap in adni_utils.py

#1177 likeajumprope closed 1 month ago
1
[MAINT] Delete `SurfStat` vendored toolbox

#1176 NicolasGensollen closed 1 month ago
0
[ENH] Proposition for adni_fmap renaming function

#1175 AliceJoubert closed 1 month ago
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Refactor and test `adni_fmap.py`

#1174 NicolasGensollen opened 1 month ago
0
Bump jinja2 from 3.1.3 to 3.1.4

#1173 dependabot[bot] closed 1 month ago
0
[Converter] ADNI-to-BIDS does not take into account history of conversion when ran successively to the same folder

#1172 AliceJoubert opened 1 month ago
1
[CI] Change unorganized folder for adni to bids tests

#1171 NicolasGensollen closed 1 month ago
0