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hello,
first of all many thanks for the work and effort to pile this workflow.
I am attending to use the pipeline however I fail to find where I can indicate where my already downloaded nt datab…
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Hello,
I have encountered the followinf error:
more SHADDVT3_asm_bp_hap1_p_ctg/run_blobtools_create.log
Reading all TSV files in ../window_stats
Traceback (most recent call last):
File "/s…
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Hi, In the documentation it [lists options for bamfilter ](https://blobtools.readme.io/docs/bamfilter#section-comments) that don't seem to exist in the version I downloaded and installed using the ins…
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I try to start the viewer. First, I tried to start it remotely as I had done before with "blobtools view --remote BlobDir". All works normal but when I try to open the URL, I get a message that the co…
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Hi,
I have been using blobtools to plot the diversity of symbiotic bacteria found in a plant. Everything seems to work great, the .bam file shows about 98% mapped reads depending on sample. However…
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Dear all,
I activate my btk_env environment, where I have the following version of nodejs-> 14.14.0
Then I launch the command:
blobtools view folder_with_different_json_files
I receive the f…
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**Environment:**
Centos7
Python = 3.9.13
blobtoolkit = 4.1.4
**Input data processing:**
pacbio hifi read
minimap2 -ax asm20 ${organism}.asm.p_ctg.fa ${organism}.cutadapt.output.fastq > ${organ…
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Goodday,
I have encountered 2 issues I am hoping to get assistance with.
First, I have encountered an issue with the generation of plots.
![image](https://github.com/blobtoolkit/blobtoolkit/ass…
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Hi there,
I'm having the same issue as described in #165 but I'm not sure I can use the same solution.
I also tried intalling xvfbwrapper in my blobtools conda environment, but this was also uns…
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Hello,
I have been trying to run diamond but without any success. I tried running it on a cluster with 64 GB RAM, after installing diamond from the source, and that is what I get:
```
diamond v…