DRL blobtools issues - Githubissues

DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

GNU General Public License v3.0

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issues

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conda installation instructions don't work

#134 mw55309 opened 1 week ago
2
Parsing Mapping file getting Killed

#133 migueldc1 closed 3 weeks ago
1
TaxID mapping file_question

#132 LadaJov opened 2 months ago
0
Cannot download taxonomy data - permission denied

#131 DIPLOMICS-SA opened 5 months ago
0
megablast taxonomy assign

#130 ykkim0127 opened 7 months ago
0
IndexError: list index out of range when parsing tax0. Blobtools normally works, not sure how to troubleshoot this error

#129 margaretc-ho closed 9 months ago
1
Can this software now check the sequencing contamination of fungi and other Eukaryote?

#128 maruiqi0710 opened 1 year ago
0
DocoptExit ImportError: No module named docopt

#127 Gon1976 closed 1 year ago
3
Blobtools fail to calculate GC, coverage

#126 margaretc-ho closed 1 year ago
8
Problems with BlobToolKit Viewer

#125 ejourdai closed 1 year ago
1
update setup.py

#124 Millak closed 1 year ago
0
docker build failing

#123 ekg opened 1 year ago
3
conda install has faulty blobtools plot

#122 sarjopp opened 2 years ago
0
Tip: some jq code to get list of "good" contigs

#121 kdm9 opened 2 years ago
0
add an output options to the nodesdb tools

#120 ArthurPERE opened 2 years ago
3
Thanks to the developers for the program

#119 SergeyBaikal closed 2 years ago
0
error in blobtools create

#118 angusdavison closed 2 years ago
0
unmapped vs mapped in covplot

#117 shoyosato opened 2 years ago
6
ModuleNotFoundError: No module named 'docopt'

#116 RahmatpourNasim closed 2 years ago
2
nodesdb not generated

#115 ccgallen opened 3 years ago
2
AttributeError: 'ParsedRequirement' object has no attribute 'req'

#114 Jigyasa3 opened 3 years ago
0
blobtools bamfilter arguments

#113 tomwells-oxf opened 3 years ago
1
fix ParsedRequirement object has no attribute 'req'

#112 tombradford closed 1 year ago
1
blobtools didn't work with nt hits

#111 wqhf opened 3 years ago
0
GC content is 0

#110 ginac opened 3 years ago
3
blobtools Create doing nothing

#109 Rob-murphys closed 3 years ago
17
Problems with Y axis in plots with rank species

#108 gitcruz opened 3 years ago
0
Why use assembled genomes vs raw reads in example workflow 1

#107 Rob-murphys opened 3 years ago
4
CONCOCT

#106 sarah872 closed 3 years ago
1
list object has no attribute values

#105 demolnau closed 3 years ago
1
python defaulting to wrong version during installation

#104 sjfleck closed 3 years ago
1
taxify "IndexError: list index out of range"

#103 Jigyasa3 opened 3 years ago
1
Empty dataset

#102 demolnau closed 3 years ago
1
Can't parse BAM files

#101 Mpersicae closed 4 years ago
3
ambiguous bamfilter option

#100 katieemelianova closed 3 years ago
1
Bamfilter outputting .fa instead of .fq

#99 theo-llewellyn opened 4 years ago
3
Pysam installation failure with conda environment

#98 wallacelab opened 4 years ago
2
no .json file produced by blobtools create

#97 peterthorpe5 closed 4 years ago
1
Error in matching of headers in FASTA and BAM

#96 jotech closed 4 years ago
2
blobtools create: [ERROR:27] nodesDB ("--db") could not be read

#95 etvedte closed 4 years ago
1
the output plot is empty

#94 XClaws closed 4 years ago
4
undef phylum

#93 XClaws closed 4 years ago
3
blobtools create tool error

#92 XClaws closed 4 years ago
3
error reading bamfile

#91 jotech closed 4 years ago
1
Blobtools for symbiosis

#90 Sandrine3 opened 4 years ago
2
taxify MemoryError

#89 Yulia-Yakovleva closed 4 years ago
1
PySam issue

#88 francoissabot closed 5 years ago
5
error in uniprot parallel download

#87 raw937 closed 4 years ago
1
ValueError: Invalid RGBA argument: '#' when assigning HEX color to phyla

#86 anhdha closed 5 years ago
3
Add Dockerfile

#85 nickp60 closed 5 years ago
1