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After success with getting Coot 1.1.10 working with @YoshitakaMo's homebrew formula working on an M1 Mac, I thought I'd try it in linuxbrew... since using the build-it-3-3 script always seems to fail …
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I tried installing the ccp4-setup package, but now everything fails with the following message:
You must first install ccp4-6.5 from http://www.ccp4.ac.uk/download
It supercedes the fink v…
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I'm getting this error:
```
File "/opt/xray/ccp4-8.0/lib/python3.7/runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "/opt/xray/ccp4-8.0/lib/python3.7/runpy.py", lin…
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Hi. I would like to write something about error I faced : "SOAP-potential file not found". This maybe helps someone.
The codes were:
> ../bin/frodock 3hfl_fv_ASA.pdb 3hfl_ly2_ASA.pdb -w 3hfl_fv_W.…
yauz3 updated
2 months ago
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A slight mystery - the ccp4 files that I have downloaded previously have different values in to the ones I have downloaded today, for example:
6eex used to have
01_NX=53
02_NY=36
03_NZ=87
04_MODE…
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Hi,
when trying to visualize the structure 4o71 and others (3q0r etc) using an input pdb file and density (2Fo) from the pdbe we can observe that the map is not well centered on the structure itsel…
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Hi Tristan,
I installed the clipper plugin from the ChimeraX toolshed, as I want to load a density map in MTZ format.
However, when I open the map, the below error appears. What could be the iss…
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You can use the Python library [Gemmi](https://github.com/project-gemmi/gemmi) to handle CCP4 data ([example](https://www.ebi.ac.uk/emdb/EMD-10765)).
To get the data into Python, execute the follo…
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@ConorFWild
- Please create separate map files for common downstream programs (coot/pymol) and their respective offset formats
- Please increase the cutoff radius for the maps
see this [slack threa…