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Dear Rick and Team,
I would like to ask for help regarding how the scores for each feature are calculated from the generateCompounds() function. My main objective is to classify the features identi…
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# COMPTOX
Public data repository for chemicals. It includes data on ADME/IVIVE, chemical properti…
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Change link to CompTox Dashboard (from by chemical results page) to link directly to the 'Exposure' tab for that chemical in the Dashboard, rather than landing on the main page for that chemical
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Checkout EPA chemistry dashboard.
https://comptox.epa.gov/dashboard/dsstoxdb/results?search=1071-83-6
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egonw updated
4 years ago
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It looks like this brick is a tox21 brick? In any case comptox.epa.gov has a lot of data that isn't present in this brick. For example, this table associated compounds with hazards is available on the…
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1. In LINKSET_EXACT_WIKIPATHWAYS20170929.ttl are URIs like an actual pattern from wikipathways? If so then need to add it to BridgeDb.
2. LINKSET_CLOSE_PARENT_CHILD_ISOTOPE_INSENSITIVE_PARENT_WIK…
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https://github.com/USEPA/CompTox-ToxCast-tcpl/blob/dev/R/tcplSubsetChid.R#L101
`dat[, hitc := hitc >= .9]`
Is this behavior desired or should it be in a new column like hitc_bool?
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Goal: Add an additional unit test to the BMD censoring tests to ensure that the CI width stays the same before and after censoring. From the conc-response plots the CI regions look slightly off (i.e.…
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Related to https://github.com/USEPA/CompTox-ToxCast-tcpl/issues/216. This is the long term solution to ensure backwards compatibility between invitrodb. Update check_tcpl_db_schema() to get list of eq…