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Consensus Clustering is an important aspect when it comes to using any clustering method in production. I don't want my users facing a set of new clusters each time deploying the pipeline.
You have …
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Hi,
I am having some trouble using hyperfreq with some samples in which a large percentage of the sequences are hypermutated. I assume it is because of the consensus sequences that they are compared …
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I'm trying to run PIMENTA from Clustering to Consenses (i.e. `RunModules='Clustering,Consensus'`). But, I can't figure out where in the settingsfile.txt file to point to my fastq files that I already …
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Hi Su,
Thanks for developing FEAST. I am interested in this tool and would like to try it on my own dataset. Since the initial clustering result plays an important role in ranking genes, could you …
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Hi,
I tried to run TEtrimmer with the test set, using the command:
**TEtrimmer --input_file test_input.fa --genome_file test_genome.fasta --output_dir test_output --num_threads 20 --classify_all…
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The sentence:
```
XXX can also be useful in a purely unsupervised setting as a
building block for a Consensus Index that can be used for clustering
model selection (TODO).
```
is in the desc…
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Hi!
Got this error when trying to compile:
```
/home/bellavista/git/clustering-in-consensus-space/graph-cut-ransac/src/pygcransac/include/relative_pose/bundle.cpp:77:18: error: reference to non-s…
fb82 updated
2 months ago
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hello, im using the `cluster.find_consensus` as a final step in my clustering pipeline. first i confirmed that it worked using a toy example, but now with my data im getting few instances where the al…
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This will include a consensus_clustering util to determine a stable clustering of data by using a 3-step process.
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Hi,
I'm having difficulty clustering using profiles when following the instructions in the wiki. Specifically I'm referring to this section:
```
# extract consensus sequences from profiles
…