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Dive into each major "category", where category is a cell type (e.g. Cones) and re-run scVI -> clustering to find celltypes within the major cells types (for example there are ML and S cones) and (pot…
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Hello,
I've used Seurat to analyse my scRNAseq data, which then I've converted into a Monocle CDS using SeuratWrappers to study the pseudotime trajectories by Monocle3b(v0.2.2.0). I have different co…
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Copied from the [RFA](https://chanzuckerberg.com/initiatives/rfa)
The goals of this RFA include, but are not limited to:
* Developing standard formats and analysis pipelines for genomic, proteom…
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https://doi.org/10.1101/057778
# Authors
Zwiessele, M. and Lawrence, N.D.
# Year
2016
# Abstract
> We present an approach to estimate the nature of the Waddington (or epigenetic) lan…
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Hi Denis,
Thanks for the beautiful tool tSPACE, I have been trying to use it to build reasonable trajectories for a bunch of developmental single cell data.
Here I have got some issue:
I…
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I was trying the USD code on the Embryoid Body dataset used in the [TrajectoryNet](https://arxiv.org/pdf/2002.04461.pdf) paper. The line
`mid_step = find_intersec(mmd_to_ref(collQ, dataQ0), mmd_to_r…
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Core ideas were adapted from 3 seminal models:New Visions for Developmental Assessment of
Young Children,21 Bright Future Guidelines,42 and theWHO International Classification of Functioning as well …
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***By Neda Sadeghi and Tonya White, Social and Cognitive Developmental Neuroscience, Laboratory of Brain and Cognition, NIMH***
***Recording and streaming volunteer***
### Emergent sessions number…
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Hi,
I have a developing mouse brain dataset of 20,000 cells.When I performed downstream analyses with a different number of PCs (Fig1), the UMAP results differ dramatically.
![image](https://use…
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Hi Monocle Team,
Sometimes, I get cells arranged in spiky lines in trajectory plots, such as the attached screenshot.
I'm using 10X UMI counts, and follow the tutorial. I had gotten clusters in…