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cole-trapnell-lab
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monocle3
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Errors to install the monocle3 in Macbook
#727
mainharryHR
opened
5 days ago
0
convert_counts_matrix failing with .monoclerc
#726
rfriedman22
opened
3 weeks ago
0
Error in h(simpleError(msg, call)) : error in evaluating the argument 'i' in selecting a method for function '[<-': default method not implemented for type 'S4'
#725
chaiepi
opened
4 weeks ago
1
Issue while downloading Monocle3 package
#724
isaiao01
opened
1 month ago
1
Bge.develop.add diagnostics.20240429
#723
brgew
closed
1 month ago
0
Monocle 3 batch correction error
#722
ZFMZSR
opened
1 month ago
0
Problem installing Monocle3
#721
dbeauv
opened
1 month ago
1
As much as I'd like to use monocle3, I can't get it on my system.
#720
simon7073
opened
1 month ago
1
monocle3 failed to run graph_test
#719
caochch
opened
1 month ago
0
Cluster_cells : Error in graph.adjacency.dense
#718
Dooo0k
opened
1 month ago
5
preprocess_cds running for hours
#717
alicerlam
opened
2 months ago
1
how to read graph_test output of monocle 3
#716
synatkeamsk
opened
2 months ago
1
install issue
#715
gucascau
closed
2 months ago
0
Driven by confounders?
#714
kylagelev
opened
2 months ago
0
question about "plot_genes_in_pseudotime"
#713
vgettaa
opened
2 months ago
1
Multiple non-continuous batches with align_cds?
#712
fauxrest
opened
2 months ago
0
Bge.develop.itermat md5sum and cleanup.20240408
#711
brgew
closed
2 months ago
0
Trajectory Analysis
#710
isaiao01
opened
2 months ago
0
Website docs table of contents clipping on mobile browsers
#709
ctrapnell
opened
3 months ago
1
Why the psudotime of my root cell is not zero?
#708
wanglu2014
opened
3 months ago
0
error in cluster_cells: Error in graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted
#707
vgettaa
closed
3 months ago
11
Upregulated and donwregulated genes in gene module
#706
rowoc
opened
3 months ago
0
choose_cells/ERROR: calculateLW: the reduced dims matrix has too few rows/No principal graph for UMAP calculated.
#705
HaixJiang
opened
3 months ago
0
Error while running learn_graph(cds, use_partition = FALSE)
#704
Fatemeh99m
opened
4 months ago
0
Installation Failure of monocle3 on Windows
#703
Cloudien
opened
4 months ago
0
New plotting functions for QC steps in data processing
#702
rfriedman22
closed
4 months ago
0
UMAP fails with later version of irlba package
#701
rfriedman22
opened
4 months ago
1
Modifications and additions to fit_models(), graph_test(), and add BP…
#700
brgew
closed
4 months ago
0
Remove gdal/terra and add sf dependencies.
#699
brgew
closed
4 months ago
0
tmp_dir not deleting after R session ends
#698
eliza-barkan
opened
5 months ago
0
plot_cells_3d() display colData values when hovering over cells
#697
Sgonzal97
opened
5 months ago
0
Md.mod.fit models.20240125
#696
brgew
closed
5 months ago
0
openssl issue with Rstudio when installing monocle3 through bioconda
#695
iaradsouza1
opened
5 months ago
0
configure: error: libproj or sqlite3 not found in standard or given locations.
#694
asmlgkj
opened
6 months ago
0
Error in learn_graph: unused argument (rann.k = rann.k)
#693
Fanny-bio
opened
7 months ago
0
after successfully install the develop branch of monocle3, error saying I don't a package called "monocle"
#692
marvelouscandy
closed
6 months ago
1
unable to create new_cell_data_set
#691
bbzz1123
closed
7 months ago
0
preprocess_cds Error in function 'as_cholmod_sparse' not provided by package 'Matrix'
#690
weiyouzi321
opened
7 months ago
26
Error in plot_genes_in_pseudotime
#689
sunxw123
opened
8 months ago
1
Tar improvements.20231025
#688
brgew
closed
8 months ago
0
How to choose starting point in seurat cluster to build trajectory analysis
#687
synatkeamsk
opened
8 months ago
0
`aggregate_gene_expression()` add `norm_method = "none"`
#686
Erlmeierlu
opened
8 months ago
0
Documentation improvements.
#685
brgew
closed
8 months ago
0
Error in t(rj) : invalid 'lazy' to R_sparse_transpose() when learn_graph
#684
bdiluccia
opened
9 months ago
1
differential analysis between conditions
#683
yamihn
opened
9 months ago
0
Installation problems with monocle in ubuntu (without sudo rights)
#682
klai001
closed
9 months ago
2
Load transform models.mod.20230914
#681
brgew
closed
9 months ago
0
Find differentially expressed genes at branchpoints which decide cell fates
#680
gilstel
opened
9 months ago
0
Error when running graph_test() with devel version
#679
abspangler13
closed
9 months ago
1
Monocle3 is not installing because I cannot update Leidenbase, Igraph and Terra
#678
mrinmay59
closed
10 months ago
2
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