cole-trapnell-lab monocle3 issues

cole-trapnell-lab / monocle3

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Support of inverse of `preprocess_cds`

#739 MUCDK opened 1 month ago
0
`orderCells` function fails due to deprecated `nei()` call**

#738 weissnichtwo opened 1 month ago
6
ERROR: dependencies ‘sf’, ‘spdep’ are not available for package ‘monocle3’

#737 xiaoli-gg opened 1 month ago
4
Installing Monocle3 on my windows laptop

#736 seattlescientist opened 1 month ago
0
Installation problem

#735 HSvitina opened 1 month ago
0
top_markers error

#734 gianfilippo closed 2 months ago
1
graph_test error: Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : row names supplied are of the wrong length

#733 alexisweber opened 2 months ago
0
export monocle graph

#732 anke-king opened 3 months ago
0
reduce_dimension error : address (nil), cause 'memory not mapped'

#731 Donbbit opened 3 months ago
0
Minimum number of transcripts to infer trajectory

#730 Psrwnsr opened 3 months ago
0
Where are you, monocle3 team!!! SO MANY BUGS UNFIXED!!!

#729 Elispar closed 3 months ago
0
When conditioned specific cells are present：

#728 metaspine opened 4 months ago
0
Errors to install the monocle3 in Macbook

#727 mainharryHR opened 4 months ago
0
convert_counts_matrix failing with .monoclerc

#726 rfriedman22 opened 5 months ago
0
Error in h(simpleError(msg, call)) : error in evaluating the argument 'i' in selecting a method for function '[<-': default method not implemented for type 'S4'

#725 chaiepi opened 5 months ago
5
Issue while downloading Monocle3 package

#724 isaiao01 opened 5 months ago
1
Bge.develop.add diagnostics.20240429

#723 brgew closed 6 months ago
0
Monocle 3 batch correction error

#722 ZFMZSR opened 6 months ago
0
Problem installing Monocle3

#721 dbeauv opened 6 months ago
2
As much as I'd like to use monocle3, I can't get it on my system.

#720 simon7073 opened 6 months ago
1
monocle3 failed to run graph_test

#719 caochch opened 6 months ago
0
Cluster_cells : Error in graph.adjacency.dense

#718 Dooo0k opened 6 months ago
5
preprocess_cds running for hours

#717 alicerlam opened 6 months ago
1
how to read graph_test output of monocle 3

#716 synatkeamsk opened 7 months ago
1
install issue

#715 gucascau closed 7 months ago
0
Driven by confounders?

#714 kylagelev opened 7 months ago
0
question about "plot_genes_in_pseudotime"

#713 vgettaa opened 7 months ago
1
Multiple non-continuous batches with align_cds?

#712 professor-sagittarius opened 7 months ago
0
Bge.develop.itermat md5sum and cleanup.20240408

#711 brgew closed 7 months ago
0
Trajectory Analysis

#710 isaiao01 opened 7 months ago
0
Website docs table of contents clipping on mobile browsers

#709 ctrapnell closed 3 months ago
1
Why the psudotime of my root cell is not zero?

#708 wanglu2014 opened 8 months ago
0
error in cluster_cells: Error in graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted

#707 vgettaa closed 7 months ago
11
Upregulated and donwregulated genes in gene module

#706 rowoc opened 8 months ago
0
choose_cells/ERROR: calculateLW: the reduced dims matrix has too few rows/No principal graph for UMAP calculated.

#705 HaixJiang opened 8 months ago
0
Error while running learn_graph(cds, use_partition = FALSE)

#704 Fatemeh99m opened 8 months ago
0
Installation Failure of monocle3 on Windows

#703 Cloudien opened 8 months ago
0
New plotting functions for QC steps in data processing

#702 rfriedman22 closed 8 months ago
0
UMAP fails with later version of irlba package

#701 rfriedman22 opened 9 months ago
1
Modifications and additions to fit_models(), graph_test(), and add BP…

#700 brgew closed 9 months ago
0
Remove gdal/terra and add sf dependencies.

#699 brgew closed 9 months ago
0
tmp_dir not deleting after R session ends

#698 eliza-barkan opened 9 months ago
0
plot_cells_3d() display colData values when hovering over cells

#697 Sgonzal97 opened 9 months ago
0
Md.mod.fit models.20240125

#696 brgew closed 9 months ago
0
openssl issue with Rstudio when installing monocle3 through bioconda

#695 iaradsouza1 opened 10 months ago
0
configure: error: libproj or sqlite3 not found in standard or given locations.

#694 asmlgkj opened 11 months ago
0
Error in learn_graph: unused argument (rann.k = rann.k)

#693 Fanny-bio opened 11 months ago
0
after successfully install the develop branch of monocle3, error saying I don't a package called "monocle"

#692 marvelouscandy closed 11 months ago
1
unable to create new_cell_data_set

#691 bbzz1123 closed 11 months ago
0
preprocess_cds Error in function 'as_cholmod_sparse' not provided by package 'Matrix'

#690 weiyouzi321 opened 1 year ago
31