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monocle3
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`aggregate_gene_expression()` add `norm_method = "none"`
#686
Erlmeierlu
opened
11 months ago
0
Documentation improvements.
#685
brgew
closed
11 months ago
0
Error in t(rj) : invalid 'lazy' to R_sparse_transpose() when learn_graph
#684
bdiluccia
opened
1 year ago
1
differential analysis between conditions
#683
yamihn
opened
1 year ago
0
Installation problems with monocle in ubuntu (without sudo rights)
#682
klai001
closed
1 year ago
2
Load transform models.mod.20230914
#681
brgew
closed
1 year ago
0
Find differentially expressed genes at branchpoints which decide cell fates
#680
gilstel
opened
1 year ago
2
Error when running graph_test() with devel version
#679
abspangler13
closed
1 year ago
1
Monocle3 is not installing because I cannot update Leidenbase, Igraph and Terra
#678
mrinmay59
closed
1 year ago
2
Fix issue 648.20230816
#677
brgew
closed
1 year ago
0
Bpcells.20230726
#676
brgew
closed
1 year ago
0
Error of plot_cells function to show trajectory graph using monocle3 v1.2.9
#675
jinming-cheng
closed
1 year ago
2
Plot cells fix.20230804
#674
brgew
closed
1 year ago
0
object 'Dim_validate' not found
#673
suhuanhou
opened
1 year ago
1
Fix plotting error, monocle3 issus 661.
#672
brgew
closed
1 year ago
0
`fit_models` and `model_formula_str`
#671
shaman-yellow
opened
1 year ago
1
Update DESCRIPTION
#670
brgew
closed
1 year ago
0
Fix 'Matrix' conversion issue 668 in top_markers().
#669
brgew
closed
1 year ago
0
find marker genes expressed by each cluster no longer working
#668
organicbrownrice
closed
1 year ago
1
Error when passing gene_module_df directly to plot_cells()
#667
LinZhang1004
closed
1 year ago
3
Error in leidenbase::leiden_find_partition(graph_result[["g"]], partition_type = partition_type, : REAL() can only be applied to a 'numeric', not a 'NULL'
#666
yueli8
closed
1 year ago
22
Different results when using violin plots and dot plots
#665
Noeperron
opened
1 year ago
1
Leiden Clustering
#664
sophmeye
closed
1 year ago
19
The meaning of cds@principal_graph_aux[["UMAP"]]$pr_graph_cell_proj_closest_vertex
#663
tengdiyouying608
closed
1 year ago
2
no difference between with and without align_cds
#662
fenghuawei
opened
1 year ago
0
length = 2' in coercion to 'logical(1)
#661
dongmin7591
closed
1 year ago
5
Error in dn[[2L]] : subscript out of bounds
#660
ttt-404
closed
1 year ago
1
Error in value[[3L]](cond) : No pseudotime calculated. Must call order_cells first.
#659
sophieastrof
closed
1 year ago
2
principles behind label_leaves ordering
#658
rasmirnov
opened
1 year ago
0
Error using Garnett : classify_cells()
#657
jonoave
opened
1 year ago
0
top_markers ERROR
#656
lvliang418
closed
1 year ago
3
Error in cds@reduce_dim_aux[[preprocess_method]][["model"]]$svd_v %*% : requires numeric/complex matrix/vector arguments
#655
cgoneill
closed
1 year ago
6
Repository for monocle alpha is not available
#654
BlackSlipper
closed
1 year ago
2
Export Monocle3 results
#653
MartaBenegas
closed
1 year ago
3
R version 4.2.3 installing problem (package ‘speedglm’)
#652
Hansenkor
closed
1 year ago
5
installation problem with or without RStudio
#651
DelphIONe
closed
1 year ago
1
subset cells and reclustering
#650
wangjiawen2013
opened
1 year ago
0
issue in plot_percent_cells_positive
#649
wz0527
opened
1 year ago
0
Fixed group_cells_by argument in plot_cells function, can PR
#648
mauritsunkel
closed
1 year ago
1
updateCDS error: could not find function
#647
dgagler
closed
1 year ago
2
R studio freezes when monocle3 is installed
#646
Tristan-Philippe
closed
1 year ago
2
Installation error
#645
sys0507
closed
1 year ago
1
How to extract cells from a branch? choose_graph_segments fail
#644
Xiaxhan
closed
1 year ago
1
installation error
#643
zipper573
closed
1 year ago
0
Is "Monocle3" feasible for understanding the disease progression ?
#642
AkilaRanjith
opened
1 year ago
0
Monocle does not order cells based on all selected initial nodes
#641
zandigohar
opened
1 year ago
2
Unable to plot "single" gene module
#640
tishida-github
opened
1 year ago
1
fix typo `dim(genes) >= 2`
#639
yuw444
opened
1 year ago
0
learn_graph() requires igraph_1.3.0. Update dependencies?
#638
Erlmeierlu
closed
1 year ago
2
gene modules monocle3
#637
VeeMaps
opened
1 year ago
7
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