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Xpost: https://discourse.julialang.org/t/scimlsensitivity-jl-precompile-error-because-of-enzyme/122561/9
Trying to follow along this the SciMLSensitivity.jl tutorial:
[Parameter Estimation of O…
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Thank you for doing such a great job. I would like to ask how you construct the negative samples mentioned in your literature. Is there any specific implementation code? I saw that you calculated the …
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Dear Memote Development Team,
I hope this message finds you well. I am currently working with enzyme-constrained metabolic models and was wondering if Memote supports the evaluation of these types …
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Hello @oftadehomid, I am still trying to use ETFL model of yeast. I find it is difficult to update the kcat for specific enzyme using the following code:
## yeast is the ETFL model
yeast.reactions.r…
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Hi, StrainDesign has worked very well for me when used on basic stoichiometric genome-scale models (e.g. iML1515). However, I am encountering problems when I try to use it on an enzyme-constrained mod…
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@PierreMartinon
```julia
@def ocp2 begin
s ∈ [0, 1], time
y = (x, tf) ∈ R², state
u ∈ R, control
dx = tf(s)^2 * u(s)
dtf = 0 # while 0 * u(s) is fine 😱 (1)
ẏ(s) == [dx…
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From the series better late than never, this is a follow up to my previous ticket #1763 (part of the time it took me to respond was that by the time I was ready, new releases of Enzyme and LLVM came o…
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```sql
SELECT sp3.*
FROM supplement_product sp1
INNER JOIN iherb_product ip1 ON ip1.id = sp1.iherb_product_id CROSS JOIN LATERAL unnest(
ip1.related_products) AS related_product_id
INNER JOIN i…
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Hi PYSINDy,
I am having trouble with getting the ensemble optimizer working with the constrained sr3 module. When I include library ensemble it errors out, and when I use bagging it solves the syst…
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Enzyme test cases are missing.
Sagas for send message and recieve message.